Atauschii AET1Gv20596900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20596900 [ AET1Gv20596900] |
1D | 341763797 | 341766847 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20596900.1 AET1Gv20596900.1 |
High | No | 570 | OG0068703 | Get ORF Coding potential... Type: noncoding Potential: -0.667 Folding energies... MFEI: -35.316 AMFE: -0.582 GC content %: 60.702 | |
| Atauschii_AET1Gv20596900.19 AET1Gv20596900.19 |
High | No | 586 | OG0068704 | Get ORF Coding potential... Type: noncoding Potential: -0.723 Folding energies... MFEI: -34.471 AMFE: -0.596 GC content %: 57.850 | |
| Atauschii_AET1Gv20596900.24 AET1Gv20596900.24 |
High | No | 827 | OG0009747 | Get ORF Coding potential... Type: noncoding Potential: -0.478 Folding energies... MFEI: -25.840 AMFE: -0.644 GC content %: 40.145 | |
| Atauschii_AET1Gv20596900.25 AET1Gv20596900.25 |
High | No | 824 | OG0009747 | Get ORF Coding potential... Type: noncoding Potential: -0.503 Folding energies... MFEI: -25.971 AMFE: -0.648 GC content %: 40.049 | |
| Atauschii_AET1Gv20596900.26 AET1Gv20596900.26 |
High | No | 557 | OG0009747 | Get ORF Coding potential... Type: noncoding Potential: -0.572 Folding energies... MFEI: -25.332 AMFE: -0.600 GC content %: 42.190 | |
| Atauschii_AET1Gv20596900.27 AET1Gv20596900.27 |
High | No | 560 | OG0009747 | Get ORF Coding potential... Type: noncoding Potential: -0.417 Folding energies... MFEI: -24.357 AMFE: -0.590 GC content %: 41.250 | |
| Atauschii_AET1Gv20596900.28 AET1Gv20596900.28 |
High | No | 566 | OG0000488 | Get ORF Coding potential... Type: noncoding Potential: -0.711 Folding energies... MFEI: -23.905 AMFE: -0.607 GC content %: 39.399 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
