Atauschii AET1Gv20608000
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20608000 [ AET1Gv20608000] |
1D | 347550710 | 347612643 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20608000.1 AET1Gv20608000.1 |
High | No | 439 | OG0068713 | Get ORF Coding potential... Type: noncoding Potential: -1.061 Folding energies... MFEI: -32.506 AMFE: -0.534 GC content %: 60.820 | |
| Atauschii_AET1Gv20608000.13 AET1Gv20608000.13 |
Low | No | 480 | OG0024368 | Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -32.896 AMFE: -0.574 GC content %: 57.292 | |
| Atauschii_AET1Gv20608000.15 AET1Gv20608000.15 |
Low | No | 479 | OG0024368 | Get ORF Coding potential... Type: noncoding Potential: -1.222 Folding energies... MFEI: -19.603 AMFE: -0.525 GC content %: 37.370 | |
| Atauschii_AET1Gv20608000.18 AET1Gv20608000.18 |
Low | No | 882 | OG0024369 | Get ORF Coding potential... Type: noncoding Potential: -0.543 Folding energies... MFEI: -26.633 AMFE: -0.609 GC content %: 43.764 | |
| Atauschii_AET1Gv20608000.19 AET1Gv20608000.19 |
High | No | 354 | OG0024369 | Get ORF Coding potential... Type: noncoding Potential: -0.897 Folding energies... MFEI: -26.864 AMFE: -0.556 GC content %: 48.305 | |
| Atauschii_AET1Gv20608000.3 AET1Gv20608000.3 |
Low | No | 419 | OG0024370 | Get ORF Coding potential... Type: noncoding Potential: -0.962 Folding energies... MFEI: -32.601 AMFE: -0.534 GC content %: 61.098 | |
| Atauschii_AET1Gv20608000.4 AET1Gv20608000.4 |
Low | No | 419 | OG0024370 | Get ORF Coding potential... Type: noncoding Potential: -0.962 Folding energies... MFEI: -32.601 AMFE: -0.534 GC content %: 61.098 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20608000.18 | SwissProt | 2021-04-01 | Q9ZT66 | 8.45e-11 |
| Atauschii_AET1Gv20608000.3 | SwissProt | 2021-04-01 | Q9ZT66 | 5.34e-10 |
| Atauschii_AET1Gv20608000.4 | SwissProt | 2021-04-01 | Q9ZT66 | 5.34e-10 |
| Atauschii_AET1Gv20608000.15 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Atauschii_AET1Gv20608000.13 | SwissProt | 2021-04-01 | Q9ZT66 | 5.29e-5 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
