GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET1Gv20611000 [ AET1Gv20611000]	1D	348404366	348417903	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET1Gv20611000.11 AET1Gv20611000.11	Low	No	1042	OG0015884		Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -27.322 AMFE: -0.634 GC content %: 43.090
Atauschii_AET1Gv20611000.18 AET1Gv20611000.18	High	No	237	OG0068720		Get ORF Coding potential... Type: noncoding Potential: -1.211 Folding energies... MFEI: -43.502 AMFE: -0.636 GC content %: 68.354
Atauschii_AET1Gv20611000.5 AET1Gv20611000.5	High	No	692	OG0068721		Get ORF Coding potential... Type: noncoding Potential: -1.229 Folding energies... MFEI: -26.720 AMFE: -0.649 GC content %: 41.185

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET1Gv20611000.11	SwissProt	2021-04-01	Q944H2	7.24e-6

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).