Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20614300 [ AET1Gv20614300] |
1D | 350100433 | 350105405 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20614300.1 AET1Gv20614300.1 |
Low | Yes | 3743 | OG0001530 | Get ORF Coding potential... Type: coding Potential: 0.382 Folding energies... MFEI: -29.893 AMFE: -0.697 GC content %: 42.880 | |
Atauschii_AET1Gv20614300.2 AET1Gv20614300.2 |
High | No | 310 | OG0001530 | Get ORF Coding potential... Type: noncoding Potential: -0.435 Folding energies... MFEI: -35.516 AMFE: -0.573 GC content %: 61.935 | |
Atauschii_AET1Gv20614300.3 AET1Gv20614300.3 |
High | No | 1086 | OG0068727 | Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -23.812 AMFE: -0.597 GC content %: 39.871 | |
Atauschii_AET1Gv20614300.4 AET1Gv20614300.4 |
High | No | 258 | OG0001530 | Get ORF Coding potential... Type: noncoding Potential: -0.891 Folding energies... MFEI: -35.969 AMFE: -0.543 GC content %: 66.279 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET1Gv20614300.1 | Rfam | 14.6 | MIR1122 | 3.5e-22 |
Atauschii_AET1Gv20614300.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger; DNA/TcMar-Stowaway; LTR/Gypsy |