Atauschii AET1Gv20635400
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20635400 [ AET1Gv20635400] |
1D | 362013114 | 362018117 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20635400.1 AET1Gv20635400.1 |
High | No | 829 | OG0002326 | Get ORF Coding potential... Type: noncoding Potential: -1.406 Folding energies... MFEI: -38.070 AMFE: -0.676 GC content %: 56.333 | |
| Atauschii_AET1Gv20635400.12 AET1Gv20635400.12 |
Low | No | 2276 | OG0002326 | Get ORF Coding potential... Type: noncoding Potential: -0.004 Folding energies... MFEI: -29.569 AMFE: -0.680 GC content %: 43.453 | |
| Atauschii_AET1Gv20635400.13 AET1Gv20635400.13 |
High | No | 1123 | OG0002326 | Get ORF Coding potential... Type: noncoding Potential: -1.072 Folding energies... MFEI: -33.455 AMFE: -0.664 GC content %: 50.401 | |
| Atauschii_AET1Gv20635400.14 AET1Gv20635400.14 |
High | No | 2333 | OG0002326 | Get ORF Coding potential... Type: noncoding Potential: -1.202 Folding energies... MFEI: -28.551 AMFE: -0.676 GC content %: 42.263 | |
| Atauschii_AET1Gv20635400.15 AET1Gv20635400.15 |
Low | No | 2148 | OG0002326 | Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -29.502 AMFE: -0.690 GC content %: 42.737 | |
| Atauschii_AET1Gv20635400.2 AET1Gv20635400.2 |
Low | No | 3560 | OG0002326 | Get ORF Coding potential... Type: noncoding Potential: -0.119 Folding energies... MFEI: -31.978 AMFE: -0.690 GC content %: 46.348 | |
| Atauschii_AET1Gv20635400.5 AET1Gv20635400.5 |
Low | No | 2595 | OG0002326 | Get ORF Coding potential... Type: noncoding Potential: -0.123 Folding energies... MFEI: -29.094 AMFE: -0.684 GC content %: 42.543 | |
| Atauschii_AET1Gv20635400.7 AET1Gv20635400.7 |
Low | No | 1978 | OG0002326 | Get ORF Coding potential... Type: noncoding Potential: -0.054 Folding energies... MFEI: -26.461 AMFE: -0.670 GC content %: 39.484 | |
| Atauschii_AET1Gv20635400.8 AET1Gv20635400.8 |
Low | No | 1006 | OG0002326 | Get ORF Coding potential... Type: noncoding Potential: -0.148 Folding energies... MFEI: -27.177 AMFE: -0.613 GC content %: 44.334 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20635400.15 | SwissProt | 2021-04-01 | O24381 | 9.22e-8 |
| Atauschii_AET1Gv20635400.2 | SwissProt | 2021-04-01 | P42211 | 2.28e-21 |
| Atauschii_AET1Gv20635400.5 | SwissProt | 2021-04-01 | P42211 | 1.62e-20 |
| Atauschii_AET1Gv20635400.7 | SwissProt | 2021-04-01 | P42211 | 1.37e-18 |
| Atauschii_AET1Gv20635400.8 | SwissProt | 2021-04-01 | P42211 | 2.64e-25 |
| Atauschii_AET1Gv20635400.12 | SwissProt | 2021-04-01 | P42211 | 2.23e-18 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
