GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET1Gv20643600 [ AET1Gv20643600]	1D	367555221	367660017	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET1Gv20643600.1 AET1Gv20643600.1	High	No	829	OG0024381		Get ORF Coding potential... Type: noncoding Potential: -0.882 Folding energies... MFEI: -30.651 AMFE: -0.584 GC content %: 52.473
Atauschii_AET1Gv20643600.2 AET1Gv20643600.2	High	No	836	OG0024381		Get ORF Coding potential... Type: noncoding Potential: -0.844 Folding energies... MFEI: -31.746 AMFE: -0.607 GC content %: 52.273
Atauschii_AET1Gv20643600.3 AET1Gv20643600.3	High	No	752	OG0015887		Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -32.234 AMFE: -0.622 GC content %: 51.862
Atauschii_AET1Gv20643600.4 AET1Gv20643600.4	High	No	777	OG0024382		Get ORF Coding potential... Type: noncoding Potential: -0.873 Folding energies... MFEI: -32.806 AMFE: -0.611 GC content %: 53.668
Atauschii_AET1Gv20643600.5 AET1Gv20643600.5	High	No	808	OG0068801		Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -33.267 AMFE: -0.608 GC content %: 54.703

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).