Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20665500 [ AET1Gv20665500] |
1D | 378788873 | 378831387 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20665500.22 AET1Gv20665500.22 |
Low | No | 721 | OG0024390 | Get ORF Coding potential... Type: noncoding Potential: -0.649 Folding energies... MFEI: -23.412 AMFE: -0.607 GC content %: 38.558 | |
Atauschii_AET1Gv20665500.28 AET1Gv20665500.28 |
Low | No | 1605 | OG0003662 | Get ORF Coding potential... Type: noncoding Potential: -0.372 Folding energies... MFEI: -27.171 AMFE: -0.671 GC content %: 40.498 | |
Atauschii_AET1Gv20665500.38 AET1Gv20665500.38 |
Low | Yes | 2410 | OG0068853 | Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -28.187 AMFE: -0.702 GC content %: 40.124 | |
Atauschii_AET1Gv20665500.39 AET1Gv20665500.39 |
Low | No | 642 | OG0015891 | Get ORF Coding potential... Type: noncoding Potential: -1.164 Folding energies... MFEI: -24.642 AMFE: -0.597 GC content %: 41.277 | |
Atauschii_AET1Gv20665500.8 AET1Gv20665500.8 |
High | No | 587 | OG0024390 | Get ORF Coding potential... Type: noncoding Potential: -0.728 Folding energies... MFEI: -22.811 AMFE: -0.575 GC content %: 39.693 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET1Gv20665500.28 | SwissProt | 2021-04-01 | F4HXV6 | 1.62e-13 |
Atauschii_AET1Gv20665500.38 | SwissProt | 2021-04-01 | Q8BGK5 | 1.38e-7 |
Atauschii_AET1Gv20665500.39 | SwissProt | 2021-04-01 | Q8IXU6 | 6.3e-13 |
Atauschii_AET1Gv20665500.38 | Rfam | 14.6 | MIR1122 | 4.9e-13 |
Atauschii_AET1Gv20665500.22 | SwissProt | 2021-04-01 | O59785 | 6.56e-7 |