Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20670700 [ AET1Gv20670700] |
1D | 382577292 | 382580768 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20670700.4 AET1Gv20670700.4 |
High | No | 1206 | OG0068860 | Get ORF Coding potential... Type: noncoding Potential: -1.294 Folding energies... MFEI: -28.789 AMFE: -0.624 GC content %: 46.103 | |
Atauschii_AET1Gv20670700.5 AET1Gv20670700.5 |
Low | Yes | 213 | OG0068861 | Get ORF Coding potential... Type: noncoding Potential: -1.433 Folding energies... MFEI: -34.601 AMFE: -0.828 GC content %: 41.784 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET1Gv20670700.5 | Rfam | 14.6 | MIR1122 | 6.9e-9 |