GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET1Gv20680500 [ AET1Gv20680500]	1D	387134078	387139047	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET1Gv20680500.1 AET1Gv20680500.1	High	No	1792	OG0024400		Get ORF Coding potential... Type: noncoding Potential: -1.103 Folding energies... MFEI: -33.292 AMFE: -0.646 GC content %: 51.507
Atauschii_AET1Gv20680500.4 AET1Gv20680500.4	High	No	492	OG0024400		Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -38.333 AMFE: -0.606 GC content %: 63.211
Atauschii_AET1Gv20680500.5 AET1Gv20680500.5	High	No	360	OG0068884		Get ORF Coding potential... Type: noncoding Potential: -0.992 Folding energies... MFEI: -36.056 AMFE: -0.656 GC content %: 55.000

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).