Atauschii AET1Gv20690000
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20690000 [ AET1Gv20690000] |
1D | 392255937 | 392259972 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20690000.10 AET1Gv20690000.10 |
Low | No | 472 | OG0002849 | Get ORF Coding potential... Type: noncoding Potential: -0.001 Folding energies... MFEI: -29.301 AMFE: -0.634 GC content %: 46.186 | |
| Atauschii_AET1Gv20690000.11 AET1Gv20690000.11 |
Low | No | 435 | OG0002849 | Get ORF Coding potential... Type: noncoding Potential: -0.431 Folding energies... MFEI: -30.736 AMFE: -0.659 GC content %: 46.667 | |
| Atauschii_AET1Gv20690000.12 AET1Gv20690000.12 |
Low | No | 438 | OG0002849 | Get ORF Coding potential... Type: noncoding Potential: -0.053 Folding energies... MFEI: -30.297 AMFE: -0.647 GC content %: 46.804 | |
| Atauschii_AET1Gv20690000.13 AET1Gv20690000.13 |
Low | No | 1305 | OG0002849 | Get ORF Coding potential... Type: noncoding Potential: -0.474 Folding energies... MFEI: -29.602 AMFE: -0.702 GC content %: 42.146 | |
| Atauschii_AET1Gv20690000.28 AET1Gv20690000.28 |
High | No | 531 | OG0068901 | Get ORF Coding potential... Type: noncoding Potential: -1.120 Folding energies... MFEI: -34.501 AMFE: -0.520 GC content %: 66.290 | |
| Atauschii_AET1Gv20690000.3 AET1Gv20690000.3 |
Low | No | 430 | OG0002849 | Get ORF Coding potential... Type: noncoding Potential: -0.935 Folding energies... MFEI: -33.116 AMFE: -0.708 GC content %: 46.744 | |
| Atauschii_AET1Gv20690000.4 AET1Gv20690000.4 |
Low | No | 520 | OG0002849 | Get ORF Coding potential... Type: noncoding Potential: -0.040 Folding energies... MFEI: -30.500 AMFE: -0.666 GC content %: 45.769 | |
| Atauschii_AET1Gv20690000.7 AET1Gv20690000.7 |
Low | No | 565 | OG0002849 | Get ORF Coding potential... Type: noncoding Potential: -0.496 Folding energies... MFEI: -31.027 AMFE: -0.693 GC content %: 44.779 | |
| Atauschii_AET1Gv20690000.8 AET1Gv20690000.8 |
Low | No | 442 | OG0002849 | Get ORF Coding potential... Type: noncoding Potential: -0.079 Folding energies... MFEI: -28.846 AMFE: -0.625 GC content %: 46.154 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20690000.3 | SwissProt | 2021-04-01 | P25209 | 1.48e-4 |
| Atauschii_AET1Gv20690000.4 | SwissProt | 2021-04-01 | P25209 | 1.06e-18 |
| Atauschii_AET1Gv20690000.10 | SwissProt | 2021-04-01 | P25209 | 7.35e-19 |
| Atauschii_AET1Gv20690000.7 | SwissProt | 2021-04-01 | P25209 | 4.48e-11 |
| Atauschii_AET1Gv20690000.11 | SwissProt | 2021-04-01 | P25209 | 2.07e-11 |
| Atauschii_AET1Gv20690000.8 | SwissProt | 2021-04-01 | P25209 | 2.07e-17 |
| Atauschii_AET1Gv20690000.12 | SwissProt | 2021-04-01 | P25209 | 4.1e-17 |
| Atauschii_AET1Gv20690000.13 | SwissProt | 2021-04-01 | P25209 | 1.48e-11 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
