GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET1Gv20691900 [ AET1Gv20691900]	1D	393170208	393209346	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET1Gv20691900.1 AET1Gv20691900.1	High	No	1108	OG0024403		Get ORF Coding potential... Type: noncoding Potential: -0.674 Folding energies... MFEI: -38.926 AMFE: -0.693 GC content %: 56.137
Atauschii_AET1Gv20691900.2 AET1Gv20691900.2	High	No	924	OG0024403		Get ORF Coding potential... Type: noncoding Potential: -0.671 Folding energies... MFEI: -40.747 AMFE: -0.708 GC content %: 57.576
Atauschii_AET1Gv20691900.3 AET1Gv20691900.3	High	No	785	OG0068906		Get ORF Coding potential... Type: noncoding Potential: -0.498 Folding energies... MFEI: -44.255 AMFE: -0.742 GC content %: 59.618

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).