GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET1Gv20694900 [ AET1Gv20694900]	1D	395052067	395057648	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET1Gv20694900.10 AET1Gv20694900.10	High	No	280	OG0024407		Get ORF Coding potential... Type: noncoding Potential: -0.978 Folding energies... MFEI: -20.000 AMFE: -0.509 GC content %: 39.286
Atauschii_AET1Gv20694900.16 AET1Gv20694900.16	High	No	732	OG0068913		Get ORF Coding potential... Type: noncoding Potential: -0.260 Folding energies... MFEI: -37.404 AMFE: -0.644 GC content %: 58.060
Atauschii_AET1Gv20694900.17 AET1Gv20694900.17	High	No	783	OG0068914		Get ORF Coding potential... Type: noncoding Potential: -0.066 Folding energies... MFEI: -42.171 AMFE: -0.650 GC content %: 64.879
Atauschii_AET1Gv20694900.3 AET1Gv20694900.3	High	No	903	OG0068915		Get ORF Coding potential... Type: noncoding Potential: -1.031 Folding energies... MFEI: -26.733 AMFE: -0.614 GC content %: 43.522

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).