GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET1Gv20714700 [ AET1Gv20714700]	1D	404550288	404553863	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET1Gv20714700.1 AET1Gv20714700.1	High	No	915	OG0015898		Get ORF Coding potential... Type: noncoding Potential: -1.340 Folding energies... MFEI: -30.995 AMFE: -0.637 GC content %: 48.634
Atauschii_AET1Gv20714700.2 AET1Gv20714700.2	High	No	688	OG0015898		Get ORF Coding potential... Type: noncoding Potential: -1.305 Folding energies... MFEI: -38.154 AMFE: -0.663 GC content %: 57.558
Atauschii_AET1Gv20714700.3 AET1Gv20714700.3	High	No	589	OG0015898		Get ORF Coding potential... Type: noncoding Potential: -1.281 Folding energies... MFEI: -37.691 AMFE: -0.640 GC content %: 58.913
Atauschii_AET1Gv20714700.4 AET1Gv20714700.4	Low	No	1482	OG0068959		Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -18.556 AMFE: -0.564 GC content %: 32.928

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET1Gv20714700.4	RepBase (RepeatMasker)	2014-01-31	DNA/hAT-Tip100

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).