Atauschii AET1Gv20721700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20721700 [ AET1Gv20721700] |
1D | 408135779 | 408140355 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20721700.1 AET1Gv20721700.1 |
High | No | 1117 | OG0000132 | Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -27.977 AMFE: -0.629 GC content %: 44.494 | |
| Atauschii_AET1Gv20721700.10 AET1Gv20721700.10 |
High | No | 1232 | OG0000132 | Get ORF Coding potential... Type: noncoding Potential: -1.064 Folding energies... MFEI: -33.206 AMFE: -0.643 GC content %: 51.623 | |
| Atauschii_AET1Gv20721700.11 AET1Gv20721700.11 |
Low | No | 1987 | OG0000132 | Get ORF Coding potential... Type: noncoding Potential: -0.932 Folding energies... MFEI: -30.815 AMFE: -0.668 GC content %: 46.150 | |
| Atauschii_AET1Gv20721700.12 AET1Gv20721700.12 |
High | No | 1401 | OG0000132 | Get ORF Coding potential... Type: noncoding Potential: -0.907 Folding energies... MFEI: -33.141 AMFE: -0.641 GC content %: 51.677 | |
| Atauschii_AET1Gv20721700.13 AET1Gv20721700.13 |
Low | No | 1402 | OG0000132 | Get ORF Coding potential... Type: noncoding Potential: -0.908 Folding energies... MFEI: -33.588 AMFE: -0.642 GC content %: 52.282 | |
| Atauschii_AET1Gv20721700.14 AET1Gv20721700.14 |
Low | No | 2592 | OG0000132 | Get ORF Coding potential... Type: noncoding Potential: -0.952 Folding energies... MFEI: -29.468 AMFE: -0.678 GC content %: 43.441 | |
| Atauschii_AET1Gv20721700.15 AET1Gv20721700.15 |
High | No | 1306 | OG0000132 | Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -29.832 AMFE: -0.688 GC content %: 43.338 | |
| Atauschii_AET1Gv20721700.16 AET1Gv20721700.16 |
Low | No | 1207 | OG0000132 | Get ORF Coding potential... Type: noncoding Potential: -1.061 Folding energies... MFEI: -34.200 AMFE: -0.651 GC content %: 52.527 | |
| Atauschii_AET1Gv20721700.17 AET1Gv20721700.17 |
High | No | 1834 | OG0000132 | Get ORF Coding potential... Type: noncoding Potential: -1.160 Folding energies... MFEI: -31.101 AMFE: -0.670 GC content %: 46.401 | |
| Atauschii_AET1Gv20721700.18 AET1Gv20721700.18 |
Low | No | 2191 | OG0000132 | Get ORF Coding potential... Type: noncoding Potential: -0.912 Folding energies... MFEI: -29.525 AMFE: -0.694 GC content %: 42.538 | |
| Atauschii_AET1Gv20721700.19 AET1Gv20721700.19 |
Low | No | 1681 | OG0000132 | Get ORF Coding potential... Type: noncoding Potential: -0.889 Folding energies... MFEI: -30.922 AMFE: -0.690 GC content %: 44.795 | |
| Atauschii_AET1Gv20721700.2 AET1Gv20721700.2 |
High | No | 1811 | OG0000132 | Get ORF Coding potential... Type: noncoding Potential: -1.107 Folding energies... MFEI: -30.326 AMFE: -0.653 GC content %: 46.438 | |
| Atauschii_AET1Gv20721700.20 AET1Gv20721700.20 |
High | No | 958 | OG0000132 | Get ORF Coding potential... Type: noncoding Potential: -0.863 Folding energies... MFEI: -35.825 AMFE: -0.663 GC content %: 54.071 | |
| Atauschii_AET1Gv20721700.21 AET1Gv20721700.21 |
High | No | 532 | OG0015900 | Get ORF Coding potential... Type: noncoding Potential: -1.262 Folding energies... MFEI: -23.853 AMFE: -0.616 GC content %: 38.722 | |
| Atauschii_AET1Gv20721700.22 AET1Gv20721700.22 |
Low | No | 1519 | OG0000132 | Get ORF Coding potential... Type: noncoding Potential: -0.905 Folding energies... MFEI: -29.250 AMFE: -0.685 GC content %: 42.725 | |
| Atauschii_AET1Gv20721700.3 AET1Gv20721700.3 |
Low | No | 2308 | OG0000132 | Get ORF Coding potential... Type: noncoding Potential: -0.796 Folding energies... MFEI: -30.186 AMFE: -0.657 GC content %: 45.971 | |
| Atauschii_AET1Gv20721700.4 AET1Gv20721700.4 |
Low | No | 2116 | OG0000132 | Get ORF Coding potential... Type: noncoding Potential: -0.937 Folding energies... MFEI: -30.851 AMFE: -0.657 GC content %: 46.975 | |
| Atauschii_AET1Gv20721700.5 AET1Gv20721700.5 |
Low | No | 2169 | OG0000132 | Get ORF Coding potential... Type: noncoding Potential: -0.939 Folding energies... MFEI: -30.595 AMFE: -0.656 GC content %: 46.657 | |
| Atauschii_AET1Gv20721700.6 AET1Gv20721700.6 |
High | No | 2087 | OG0000132 | Get ORF Coding potential... Type: noncoding Potential: -0.944 Folding energies... MFEI: -30.661 AMFE: -0.655 GC content %: 46.814 | |
| Atauschii_AET1Gv20721700.7 AET1Gv20721700.7 |
Low | No | 2512 | OG0000132 | Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -29.435 AMFE: -0.675 GC content %: 43.631 | |
| Atauschii_AET1Gv20721700.8 AET1Gv20721700.8 |
Low | No | 2695 | OG0000132 | Get ORF Coding potential... Type: noncoding Potential: -0.954 Folding energies... MFEI: -29.236 AMFE: -0.665 GC content %: 43.933 | |
| Atauschii_AET1Gv20721700.9 AET1Gv20721700.9 |
Low | No | 1576 | OG0000132 | Get ORF Coding potential... Type: noncoding Potential: -0.774 Folding energies... MFEI: -32.227 AMFE: -0.660 GC content %: 48.794 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20721700.22 | SwissProt | 2021-04-01 | Q7Y0Y8 | 1.19e-7 |
| Atauschii_AET1Gv20721700.9 | SwissProt | 2021-04-01 | Q7Y0Y8 | 7.69e-7 |
| Atauschii_AET1Gv20721700.3 | SwissProt | 2021-04-01 | Q7Y0Y8 | 1.36e-6 |
| Atauschii_AET1Gv20721700.11 | SwissProt | 2021-04-01 | Q7Y0Y8 | 1.85e-7 |
| Atauschii_AET1Gv20721700.11 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET1Gv20721700.4 | SwissProt | 2021-04-01 | Q7Y0Y8 | 2.02e-7 |
| Atauschii_AET1Gv20721700.14 | SwissProt | 2021-04-01 | Q7Y0Y8 | 2.69e-7 |
| Atauschii_AET1Gv20721700.13 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET1Gv20721700.5 | SwissProt | 2021-04-01 | Q7Y0Y8 | 2.1e-7 |
| Atauschii_AET1Gv20721700.18 | SwissProt | 2021-04-01 | Q7Y0Y8 | 2.12e-5 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
