Atauschii AET1Gv20731800
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20731800 [ AET1Gv20731800] |
1D | 411513078 | 411516685 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20731800.1 AET1Gv20731800.1 |
Low | No | 2669 | OG0001139 | Get ORF Coding potential... Type: noncoding Potential: -0.218 Folding energies... MFEI: -25.200 AMFE: -0.687 GC content %: 36.680 | |
| Atauschii_AET1Gv20731800.10 AET1Gv20731800.10 |
Low | No | 2629 | OG0001139 | Get ORF Coding potential... Type: noncoding Potential: -0.220 Folding energies... MFEI: -25.105 AMFE: -0.683 GC content %: 36.782 | |
| Atauschii_AET1Gv20731800.11 AET1Gv20731800.11 |
Low | No | 2692 | OG0001139 | Get ORF Coding potential... Type: noncoding Potential: -0.270 Folding energies... MFEI: -27.051 AMFE: -0.679 GC content %: 39.859 | |
| Atauschii_AET1Gv20731800.12 AET1Gv20731800.12 |
Low | No | 881 | OG0001139 | Get ORF Coding potential... Type: noncoding Potential: -0.148 Folding energies... MFEI: -32.690 AMFE: -0.646 GC content %: 50.624 | |
| Atauschii_AET1Gv20731800.14 AET1Gv20731800.14 |
Low | No | 557 | OG0001139 | Get ORF Coding potential... Type: noncoding Potential: -1.156 Folding energies... MFEI: -31.724 AMFE: -0.620 GC content %: 51.167 | |
| Atauschii_AET1Gv20731800.15 AET1Gv20731800.15 |
Low | No | 283 | OG0068991 | Get ORF Coding potential... Type: noncoding Potential: -0.955 Folding energies... MFEI: -35.018 AMFE: -0.612 GC content %: 57.244 | |
| Atauschii_AET1Gv20731800.2 AET1Gv20731800.2 |
Low | No | 2834 | OG0001139 | Get ORF Coding potential... Type: noncoding Potential: -0.282 Folding energies... MFEI: -27.001 AMFE: -0.684 GC content %: 39.485 | |
| Atauschii_AET1Gv20731800.3 AET1Gv20731800.3 |
Low | No | 2498 | OG0001139 | Get ORF Coding potential... Type: noncoding Potential: -0.261 Folding energies... MFEI: -27.182 AMFE: -0.684 GC content %: 39.752 | |
| Atauschii_AET1Gv20731800.4 AET1Gv20731800.4 |
Low | No | 2717 | OG0001139 | Get ORF Coding potential... Type: noncoding Potential: -0.256 Folding energies... MFEI: -27.298 AMFE: -0.682 GC content %: 40.007 | |
| Atauschii_AET1Gv20731800.5 AET1Gv20731800.5 |
Low | No | 3036 | OG0001139 | Get ORF Coding potential... Type: noncoding Potential: -0.216 Folding energies... MFEI: -26.169 AMFE: -0.687 GC content %: 38.076 | |
| Atauschii_AET1Gv20731800.6 AET1Gv20731800.6 |
Low | No | 2844 | OG0001139 | Get ORF Coding potential... Type: noncoding Potential: -1.219 Folding energies... MFEI: -25.404 AMFE: -0.685 GC content %: 37.096 | |
| Atauschii_AET1Gv20731800.7 AET1Gv20731800.7 |
Low | No | 2529 | OG0001139 | Get ORF Coding potential... Type: noncoding Potential: -0.213 Folding energies... MFEI: -25.287 AMFE: -0.684 GC content %: 36.971 | |
| Atauschii_AET1Gv20731800.8 AET1Gv20731800.8 |
Low | No | 2824 | OG0001139 | Get ORF Coding potential... Type: noncoding Potential: -0.261 Folding energies... MFEI: -26.979 AMFE: -0.683 GC content %: 39.483 | |
| Atauschii_AET1Gv20731800.9 AET1Gv20731800.9 |
Low | No | 2721 | OG0001139 | Get ORF Coding potential... Type: noncoding Potential: -0.248 Folding energies... MFEI: -26.832 AMFE: -0.680 GC content %: 39.471 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20731800.11 | SwissProt | 2021-04-01 | P85200 | 1.0e-15 |
| Atauschii_AET1Gv20731800.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET1Gv20731800.9 | SwissProt | 2021-04-01 | P85200 | 2.91e-16 |
| Atauschii_AET1Gv20731800.4 | SwissProt | 2021-04-01 | P85200 | 4.72e-16 |
| Atauschii_AET1Gv20731800.12 | SwissProt | 2021-04-01 | P85200 | 4.83e-17 |
| Atauschii_AET1Gv20731800.6 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET1Gv20731800.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET1Gv20731800.5 | SwissProt | 2021-04-01 | P85200 | 1.73e-16 |
| Atauschii_AET1Gv20731800.14 | SwissProt | 2021-04-01 | P85200 | 1.19e-5 |
| Atauschii_AET1Gv20731800.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
