Atauschii AET1Gv20763500
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20763500 [ AET1Gv20763500] |
1D | 421670489 | 421673063 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20763500.10 AET1Gv20763500.10 |
High | No | 691 | OG0002328 | Get ORF Coding potential... Type: noncoding Potential: -0.791 Folding energies... MFEI: -30.579 AMFE: -0.636 GC content %: 48.046 | |
| Atauschii_AET1Gv20763500.11 AET1Gv20763500.11 |
High | No | 758 | OG0002328 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -26.623 AMFE: -0.608 GC content %: 43.799 | |
| Atauschii_AET1Gv20763500.3 AET1Gv20763500.3 |
High | No | 965 | OG0002328 | Get ORF Coding potential... Type: noncoding Potential: -0.438 Folding energies... MFEI: -33.451 AMFE: -0.593 GC content %: 56.373 | |
| Atauschii_AET1Gv20763500.4 AET1Gv20763500.4 |
High | No | 954 | OG0002328 | Get ORF Coding potential... Type: noncoding Potential: -0.482 Folding energies... MFEI: -35.409 AMFE: -0.621 GC content %: 57.023 | |
| Atauschii_AET1Gv20763500.5 AET1Gv20763500.5 |
High | No | 964 | OG0002328 | Get ORF Coding potential... Type: noncoding Potential: -0.484 Folding energies... MFEI: -34.637 AMFE: -0.621 GC content %: 55.809 | |
| Atauschii_AET1Gv20763500.6 AET1Gv20763500.6 |
High | No | 841 | OG0002328 | Get ORF Coding potential... Type: noncoding Potential: -0.440 Folding energies... MFEI: -34.625 AMFE: -0.596 GC content %: 58.145 | |
| Atauschii_AET1Gv20763500.7 AET1Gv20763500.7 |
High | No | 840 | OG0002328 | Get ORF Coding potential... Type: noncoding Potential: -0.464 Folding energies... MFEI: -34.548 AMFE: -0.595 GC content %: 58.095 | |
| Atauschii_AET1Gv20763500.8 AET1Gv20763500.8 |
High | No | 823 | OG0002328 | Get ORF Coding potential... Type: noncoding Potential: -0.454 Folding energies... MFEI: -33.414 AMFE: -0.593 GC content %: 56.379 | |
| Atauschii_AET1Gv20763500.9 AET1Gv20763500.9 |
High | No | 673 | OG0002328 | Get ORF Coding potential... Type: noncoding Potential: -0.622 Folding energies... MFEI: -30.832 AMFE: -0.627 GC content %: 49.183 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
