Atauschii AET1Gv20770100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20770100 [ AET1Gv20770100] |
1D | 422939152 | 422945087 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20770100.1 AET1Gv20770100.1 |
High | No | 2122 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -0.930 Folding energies... MFEI: -31.277 AMFE: -0.654 GC content %: 47.832 | |
| Atauschii_AET1Gv20770100.10 AET1Gv20770100.10 |
High | No | 1708 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -0.909 Folding energies... MFEI: -33.753 AMFE: -0.654 GC content %: 51.639 | |
| Atauschii_AET1Gv20770100.11 AET1Gv20770100.11 |
High | No | 3420 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -0.966 Folding energies... MFEI: -27.868 AMFE: -0.644 GC content %: 43.246 | |
| Atauschii_AET1Gv20770100.12 AET1Gv20770100.12 |
High | No | 1515 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -0.958 Folding energies... MFEI: -34.950 AMFE: -0.656 GC content %: 53.267 | |
| Atauschii_AET1Gv20770100.13 AET1Gv20770100.13 |
High | No | 3989 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -0.974 Folding energies... MFEI: -26.962 AMFE: -0.641 GC content %: 42.066 | |
| Atauschii_AET1Gv20770100.14 AET1Gv20770100.14 |
High | No | 1678 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -0.907 Folding energies... MFEI: -33.695 AMFE: -0.653 GC content %: 51.609 | |
| Atauschii_AET1Gv20770100.15 AET1Gv20770100.15 |
High | No | 4000 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -0.974 Folding energies... MFEI: -26.840 AMFE: -0.645 GC content %: 41.625 | |
| Atauschii_AET1Gv20770100.16 AET1Gv20770100.16 |
High | No | 4722 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -26.417 AMFE: -0.637 GC content %: 41.444 | |
| Atauschii_AET1Gv20770100.17 AET1Gv20770100.17 |
High | No | 1608 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -33.862 AMFE: -0.650 GC content %: 52.114 | |
| Atauschii_AET1Gv20770100.18 AET1Gv20770100.18 |
High | No | 4763 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -26.336 AMFE: -0.633 GC content %: 41.591 | |
| Atauschii_AET1Gv20770100.19 AET1Gv20770100.19 |
High | No | 1569 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -0.899 Folding energies... MFEI: -33.932 AMFE: -0.656 GC content %: 51.753 | |
| Atauschii_AET1Gv20770100.2 AET1Gv20770100.2 |
High | No | 3997 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -1.008 Folding energies... MFEI: -27.033 AMFE: -0.642 GC content %: 42.082 | |
| Atauschii_AET1Gv20770100.20 AET1Gv20770100.20 |
High | No | 5286 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -0.987 Folding energies... MFEI: -25.325 AMFE: -0.621 GC content %: 40.749 | |
| Atauschii_AET1Gv20770100.21 AET1Gv20770100.21 |
High | No | 4354 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -0.978 Folding energies... MFEI: -26.383 AMFE: -0.627 GC content %: 42.076 | |
| Atauschii_AET1Gv20770100.23 AET1Gv20770100.23 |
High | No | 1483 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -0.957 Folding energies... MFEI: -31.949 AMFE: -0.628 GC content %: 50.910 | |
| Atauschii_AET1Gv20770100.24 AET1Gv20770100.24 |
High | No | 3742 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -1.156 Folding energies... MFEI: -23.538 AMFE: -0.602 GC content %: 39.123 | |
| Atauschii_AET1Gv20770100.25 AET1Gv20770100.25 |
High | No | 899 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -1.313 Folding energies... MFEI: -23.893 AMFE: -0.577 GC content %: 41.379 | |
| Atauschii_AET1Gv20770100.26 AET1Gv20770100.26 |
High | No | 758 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -1.292 Folding energies... MFEI: -22.296 AMFE: -0.569 GC content %: 39.182 | |
| Atauschii_AET1Gv20770100.27 AET1Gv20770100.27 |
High | No | 938 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -20.928 AMFE: -0.538 GC content %: 38.913 | |
| Atauschii_AET1Gv20770100.28 AET1Gv20770100.28 |
High | No | 671 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -1.275 Folding energies... MFEI: -21.043 AMFE: -0.541 GC content %: 38.897 | |
| Atauschii_AET1Gv20770100.29 AET1Gv20770100.29 |
High | No | 363 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -1.162 Folding energies... MFEI: -16.804 AMFE: -0.480 GC content %: 34.986 | |
| Atauschii_AET1Gv20770100.3 AET1Gv20770100.3 |
High | No | 4364 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -0.978 Folding energies... MFEI: -26.517 AMFE: -0.638 GC content %: 41.590 | |
| Atauschii_AET1Gv20770100.4 AET1Gv20770100.4 |
High | No | 2460 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -0.943 Folding energies... MFEI: -30.992 AMFE: -0.643 GC content %: 48.171 | |
| Atauschii_AET1Gv20770100.5 AET1Gv20770100.5 |
High | No | 3564 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -0.968 Folding energies... MFEI: -27.337 AMFE: -0.639 GC content %: 42.761 | |
| Atauschii_AET1Gv20770100.6 AET1Gv20770100.6 |
High | No | 3349 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -0.965 Folding energies... MFEI: -27.764 AMFE: -0.644 GC content %: 43.117 | |
| Atauschii_AET1Gv20770100.7 AET1Gv20770100.7 |
High | No | 3107 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -0.960 Folding energies... MFEI: -28.310 AMFE: -0.651 GC content %: 43.515 | |
| Atauschii_AET1Gv20770100.8 AET1Gv20770100.8 |
High | No | 1427 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -0.954 Folding energies... MFEI: -35.739 AMFE: -0.655 GC content %: 54.590 | |
| Atauschii_AET1Gv20770100.9 AET1Gv20770100.9 |
High | No | 1531 | OG0000224 | Get ORF Coding potential... Type: noncoding Potential: -0.896 Folding energies... MFEI: -35.088 AMFE: -0.669 GC content %: 52.449 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
