GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET1Gv20791600 [ AET1Gv20791600]	1D	427592325	427788138	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET1Gv20791600.1 AET1Gv20791600.1	High	No	502	OG0069074		Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -26.833 AMFE: -0.596 GC content %: 45.020
Atauschii_AET1Gv20791600.13 AET1Gv20791600.13	High	No	800	OG0069075		Get ORF Coding potential... Type: noncoding Potential: -0.418 Folding energies... MFEI: -30.700 AMFE: -0.586 GC content %: 52.375

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).