Atauschii AET1Gv20810600
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20810600 [ AET1Gv20810600] |
1D | 436335050 | 436339220 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20810600.1 AET1Gv20810600.1 |
Low | No | 1402 | OG0000437 | Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -34.686 AMFE: -0.582 GC content %: 59.558 | |
| Atauschii_AET1Gv20810600.10 AET1Gv20810600.10 |
Low | No | 1113 | OG0000437 | Get ORF Coding potential... Type: noncoding Potential: -0.148 Folding energies... MFEI: -35.750 AMFE: -0.590 GC content %: 60.557 | |
| Atauschii_AET1Gv20810600.11 AET1Gv20810600.11 |
Low | No | 1252 | OG0000437 | Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -35.519 AMFE: -0.587 GC content %: 60.463 | |
| Atauschii_AET1Gv20810600.12 AET1Gv20810600.12 |
High | No | 577 | OG0000437 | Get ORF Coding potential... Type: noncoding Potential: -0.826 Folding energies... MFEI: -25.789 AMFE: -0.600 GC content %: 42.981 | |
| Atauschii_AET1Gv20810600.13 AET1Gv20810600.13 |
Low | No | 1366 | OG0000437 | Get ORF Coding potential... Type: noncoding Potential: -1.061 Folding energies... MFEI: -34.671 AMFE: -0.585 GC content %: 59.297 | |
| Atauschii_AET1Gv20810600.14 AET1Gv20810600.14 |
Low | No | 868 | OG0000437 | Get ORF Coding potential... Type: noncoding Potential: -0.951 Folding energies... MFEI: -31.083 AMFE: -0.635 GC content %: 48.963 | |
| Atauschii_AET1Gv20810600.15 AET1Gv20810600.15 |
Low | No | 1135 | OG0000437 | Get ORF Coding potential... Type: noncoding Potential: -0.144 Folding energies... MFEI: -35.630 AMFE: -0.586 GC content %: 60.793 | |
| Atauschii_AET1Gv20810600.16 AET1Gv20810600.16 |
Low | No | 1668 | OG0000437 | Get ORF Coding potential... Type: noncoding Potential: -1.007 Folding energies... MFEI: -30.965 AMFE: -0.592 GC content %: 52.338 | |
| Atauschii_AET1Gv20810600.17 AET1Gv20810600.17 |
Low | No | 1100 | OG0000437 | Get ORF Coding potential... Type: noncoding Potential: -1.032 Folding energies... MFEI: -34.018 AMFE: -0.562 GC content %: 60.545 | |
| Atauschii_AET1Gv20810600.18 AET1Gv20810600.18 |
Low | No | 999 | OG0000437 | Get ORF Coding potential... Type: noncoding Potential: -1.108 Folding energies... MFEI: -33.063 AMFE: -0.537 GC content %: 61.562 | |
| Atauschii_AET1Gv20810600.19 AET1Gv20810600.19 |
Low | Yes | 272 | OG0000437 | Get ORF Coding potential... Type: noncoding Potential: -0.974 Folding energies... MFEI: -19.338 AMFE: -0.554 GC content %: 34.926 | |
| Atauschii_AET1Gv20810600.2 AET1Gv20810600.2 |
Low | No | 1185 | OG0000437 | Get ORF Coding potential... Type: noncoding Potential: -0.194 Folding energies... MFEI: -34.920 AMFE: -0.574 GC content %: 60.844 | |
| Atauschii_AET1Gv20810600.20 AET1Gv20810600.20 |
High | No | 1284 | OG0000437 | Get ORF Coding potential... Type: noncoding Potential: -1.049 Folding energies... MFEI: -30.569 AMFE: -0.562 GC content %: 54.361 | |
| Atauschii_AET1Gv20810600.21 AET1Gv20810600.21 |
High | No | 1555 | OG0000437 | Get ORF Coding potential... Type: noncoding Potential: -1.067 Folding energies... MFEI: -31.113 AMFE: -0.597 GC content %: 52.090 | |
| Atauschii_AET1Gv20810600.3 AET1Gv20810600.3 |
Low | No | 1875 | OG0000437 | Get ORF Coding potential... Type: noncoding Potential: -1.120 Folding energies... MFEI: -33.765 AMFE: -0.612 GC content %: 55.200 | |
| Atauschii_AET1Gv20810600.4 AET1Gv20810600.4 |
Low | No | 1608 | OG0000437 | Get ORF Coding potential... Type: noncoding Potential: -1.093 Folding energies... MFEI: -33.787 AMFE: -0.587 GC content %: 57.525 | |
| Atauschii_AET1Gv20810600.5 AET1Gv20810600.5 |
Low | No | 1205 | OG0000437 | Get ORF Coding potential... Type: noncoding Potential: -1.054 Folding energies... MFEI: -35.502 AMFE: -0.590 GC content %: 60.166 | |
| Atauschii_AET1Gv20810600.6 AET1Gv20810600.6 |
Low | No | 1210 | OG0000437 | Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -35.620 AMFE: -0.591 GC content %: 60.248 | |
| Atauschii_AET1Gv20810600.7 AET1Gv20810600.7 |
Low | No | 1413 | OG0000437 | Get ORF Coding potential... Type: noncoding Potential: -1.068 Folding energies... MFEI: -34.643 AMFE: -0.581 GC content %: 59.590 | |
| Atauschii_AET1Gv20810600.8 AET1Gv20810600.8 |
Low | No | 1249 | OG0000437 | Get ORF Coding potential... Type: noncoding Potential: -1.062 Folding energies... MFEI: -35.348 AMFE: -0.585 GC content %: 60.448 | |
| Atauschii_AET1Gv20810600.9 AET1Gv20810600.9 |
Low | No | 1368 | OG0000437 | Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -34.386 AMFE: -0.579 GC content %: 59.357 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20810600.14 | SwissProt | 2021-04-01 | P40619 | 1.39e-7 |
| Atauschii_AET1Gv20810600.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET1Gv20810600.8 | SwissProt | 2021-04-01 | P40619 | 3.94e-7 |
| Atauschii_AET1Gv20810600.3 | SwissProt | 2021-04-01 | P40619 | 3.84e-7 |
| Atauschii_AET1Gv20810600.15 | SwissProt | 2021-04-01 | P40619 | 2.6e-12 |
| Atauschii_AET1Gv20810600.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET1Gv20810600.1 | SwissProt | 2021-04-01 | P40619 | 4.55e-7 |
| Atauschii_AET1Gv20810600.9 | SwissProt | 2021-04-01 | P40619 | 4.44e-7 |
| Atauschii_AET1Gv20810600.4 | SwissProt | 2021-04-01 | P40619 | 3.19e-7 |
| Atauschii_AET1Gv20810600.16 | SwissProt | 2021-04-01 | P40619 | 7.16e-7 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
