Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20812900 [ AET1Gv20812900] |
1D | 437426408 | 437434577 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20812900.4 AET1Gv20812900.4 |
Low | No | 4300 | OG0003663 | Get ORF Coding potential... Type: noncoding Potential: -0.572 Folding energies... MFEI: -25.495 AMFE: -0.623 GC content %: 40.907 | |
Atauschii_AET1Gv20812900.5 AET1Gv20812900.5 |
Low | Yes | 6003 | OG0003663 | Get ORF Coding potential... Type: noncoding Potential: -0.490 Folding energies... MFEI: -25.827 AMFE: -0.653 GC content %: 39.564 | |
Atauschii_AET1Gv20812900.6 AET1Gv20812900.6 |
Low | No | 1710 | OG0003663 | Get ORF Coding potential... Type: noncoding Potential: -1.332 Folding energies... MFEI: -25.281 AMFE: -0.590 GC content %: 42.865 | |
Atauschii_AET1Gv20812900.7 AET1Gv20812900.7 |
Low | No | 1144 | OG0003663 | Get ORF Coding potential... Type: noncoding Potential: -1.297 Folding energies... MFEI: -24.441 AMFE: -0.583 GC content %: 41.958 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET1Gv20812900.5 | Rfam | 14.6 | MIR1122 | 9.2e-14 |
Atauschii_AET1Gv20812900.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA; DNA/Maverick | |
Atauschii_AET1Gv20812900.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA; DNA/Maverick; DNA/TcMar-Stowaway | |
Atauschii_AET1Gv20812900.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
Atauschii_AET1Gv20812900.4 | SwissProt | 2021-04-01 | Q9SXZ2 | 4.93e-12 |
Atauschii_AET1Gv20812900.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/Maverick | |
Atauschii_AET1Gv20812900.5 | SwissProt | 2021-04-01 | Q9SXZ2 | 7.05e-12 |