Atauschii AET1Gv20878400
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20878400 [ AET1Gv20878400] |
1D | 454798706 | 454804279 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20878400.1 AET1Gv20878400.1 |
Low | No | 2532 | OG0009762 | Get ORF Coding potential... Type: noncoding Potential: -1.206 Folding energies... MFEI: -29.672 AMFE: -0.624 GC content %: 47.551 | |
| Atauschii_AET1Gv20878400.12 AET1Gv20878400.12 |
High | No | 1188 | OG0009762 | Get ORF Coding potential... Type: noncoding Potential: -1.371 Folding energies... MFEI: -28.704 AMFE: -0.622 GC content %: 46.128 | |
| Atauschii_AET1Gv20878400.2 AET1Gv20878400.2 |
High | No | 2836 | OG0009762 | Get ORF Coding potential... Type: noncoding Potential: -1.067 Folding energies... MFEI: -29.570 AMFE: -0.638 GC content %: 46.368 | |
| Atauschii_AET1Gv20878400.26 AET1Gv20878400.26 |
High | No | 941 | OG0002852 | Get ORF Coding potential... Type: noncoding Potential: -1.237 Folding energies... MFEI: -29.277 AMFE: -0.616 GC content %: 47.503 | |
| Atauschii_AET1Gv20878400.29 AET1Gv20878400.29 |
High | No | 930 | OG0069201 | Get ORF Coding potential... Type: noncoding Potential: -0.618 Folding energies... MFEI: -39.871 AMFE: -0.603 GC content %: 66.129 | |
| Atauschii_AET1Gv20878400.3 AET1Gv20878400.3 |
Low | No | 3050 | OG0009762 | Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -30.039 AMFE: -0.660 GC content %: 45.541 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20878400.3 | SwissProt | 2021-04-01 | B7KWT4 | 9.12e-5 |
| Atauschii_AET1Gv20878400.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
