Atauschii AET1Gv20879000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20879000 [ AET1Gv20879000] |
1D | 455051126 | 455056883 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20879000.1 AET1Gv20879000.1 |
Low | No | 4579 | OG0000268 | Get ORF Coding potential... Type: noncoding Potential: -1.135 Folding energies... MFEI: -24.296 AMFE: -0.638 GC content %: 38.087 | |
| Atauschii_AET1Gv20879000.10 AET1Gv20879000.10 |
High | No | 4341 | OG0000268 | Get ORF Coding potential... Type: noncoding Potential: -0.584 Folding energies... MFEI: -27.941 AMFE: -0.650 GC content %: 42.985 | |
| Atauschii_AET1Gv20879000.11 AET1Gv20879000.11 |
High | No | 3981 | OG0000268 | Get ORF Coding potential... Type: noncoding Potential: -0.580 Folding energies... MFEI: -28.428 AMFE: -0.656 GC content %: 43.306 | |
| Atauschii_AET1Gv20879000.12 AET1Gv20879000.12 |
High | No | 4277 | OG0000268 | Get ORF Coding potential... Type: noncoding Potential: -0.583 Folding energies... MFEI: -28.055 AMFE: -0.649 GC content %: 43.231 | |
| Atauschii_AET1Gv20879000.13 AET1Gv20879000.13 |
High | No | 2559 | OG0000268 | Get ORF Coding potential... Type: noncoding Potential: -0.554 Folding energies... MFEI: -31.039 AMFE: -0.649 GC content %: 47.831 | |
| Atauschii_AET1Gv20879000.14 AET1Gv20879000.14 |
High | No | 3286 | OG0000268 | Get ORF Coding potential... Type: noncoding Potential: -1.113 Folding energies... MFEI: -25.119 AMFE: -0.658 GC content %: 38.192 | |
| Atauschii_AET1Gv20879000.15 AET1Gv20879000.15 |
High | No | 3118 | OG0000268 | Get ORF Coding potential... Type: noncoding Potential: -1.112 Folding energies... MFEI: -25.972 AMFE: -0.667 GC content %: 38.967 | |
| Atauschii_AET1Gv20879000.16 AET1Gv20879000.16 |
High | No | 3149 | OG0000268 | Get ORF Coding potential... Type: noncoding Potential: -1.112 Folding energies... MFEI: -25.748 AMFE: -0.659 GC content %: 39.060 | |
| Atauschii_AET1Gv20879000.17 AET1Gv20879000.17 |
High | No | 3416 | OG0000268 | Get ORF Coding potential... Type: noncoding Potential: -0.572 Folding energies... MFEI: -29.947 AMFE: -0.664 GC content %: 45.082 | |
| Atauschii_AET1Gv20879000.18 AET1Gv20879000.18 |
High | No | 3620 | OG0000268 | Get ORF Coding potential... Type: noncoding Potential: -0.575 Folding energies... MFEI: -28.936 AMFE: -0.660 GC content %: 43.840 | |
| Atauschii_AET1Gv20879000.19 AET1Gv20879000.19 |
High | No | 2559 | OG0000268 | Get ORF Coding potential... Type: noncoding Potential: -0.554 Folding energies... MFEI: -31.133 AMFE: -0.651 GC content %: 47.831 | |
| Atauschii_AET1Gv20879000.2 AET1Gv20879000.2 |
Low | No | 503 | OG0000268 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -20.060 AMFE: -0.528 GC content %: 37.972 | |
| Atauschii_AET1Gv20879000.20 AET1Gv20879000.20 |
High | No | 2946 | OG0000268 | Get ORF Coding potential... Type: noncoding Potential: -0.563 Folding energies... MFEI: -30.018 AMFE: -0.644 GC content %: 46.640 | |
| Atauschii_AET1Gv20879000.21 AET1Gv20879000.21 |
High | No | 3511 | OG0000268 | Get ORF Coding potential... Type: noncoding Potential: -0.573 Folding energies... MFEI: -28.912 AMFE: -0.658 GC content %: 43.919 | |
| Atauschii_AET1Gv20879000.22 AET1Gv20879000.22 |
High | No | 3383 | OG0000268 | Get ORF Coding potential... Type: noncoding Potential: -0.571 Folding energies... MFEI: -28.712 AMFE: -0.645 GC content %: 44.487 | |
| Atauschii_AET1Gv20879000.23 AET1Gv20879000.23 |
High | No | 3548 | OG0000268 | Get ORF Coding potential... Type: noncoding Potential: -0.574 Folding energies... MFEI: -29.030 AMFE: -0.659 GC content %: 44.053 | |
| Atauschii_AET1Gv20879000.24 AET1Gv20879000.24 |
High | No | 3303 | OG0000268 | Get ORF Coding potential... Type: noncoding Potential: -0.570 Folding energies... MFEI: -29.437 AMFE: -0.655 GC content %: 44.929 | |
| Atauschii_AET1Gv20879000.25 AET1Gv20879000.25 |
High | No | 1058 | OG0000268 | Get ORF Coding potential... Type: noncoding Potential: -1.024 Folding energies... MFEI: -30.198 AMFE: -0.586 GC content %: 51.512 | |
| Atauschii_AET1Gv20879000.26 AET1Gv20879000.26 |
High | No | 1044 | OG0000268 | Get ORF Coding potential... Type: noncoding Potential: -0.466 Folding energies... MFEI: -34.588 AMFE: -0.612 GC content %: 56.513 | |
| Atauschii_AET1Gv20879000.3 AET1Gv20879000.3 |
Low | No | 3320 | OG0000268 | Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -28.307 AMFE: -0.646 GC content %: 43.795 | |
| Atauschii_AET1Gv20879000.4 AET1Gv20879000.4 |
Low | No | 3926 | OG0000268 | Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -26.666 AMFE: -0.638 GC content %: 41.824 | |
| Atauschii_AET1Gv20879000.5 AET1Gv20879000.5 |
Low | No | 3474 | OG0000268 | Get ORF Coding potential... Type: noncoding Potential: -0.573 Folding energies... MFEI: -29.249 AMFE: -0.648 GC content %: 45.107 | |
| Atauschii_AET1Gv20879000.6 AET1Gv20879000.6 |
Low | No | 3489 | OG0000268 | Get ORF Coding potential... Type: noncoding Potential: -0.573 Folding energies... MFEI: -28.845 AMFE: -0.650 GC content %: 44.368 | |
| Atauschii_AET1Gv20879000.7 AET1Gv20879000.7 |
Low | No | 4131 | OG0000268 | Get ORF Coding potential... Type: noncoding Potential: -0.581 Folding energies... MFEI: -28.182 AMFE: -0.651 GC content %: 43.258 | |
| Atauschii_AET1Gv20879000.8 AET1Gv20879000.8 |
High | No | 2656 | OG0000268 | Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -26.532 AMFE: -0.669 GC content %: 39.684 | |
| Atauschii_AET1Gv20879000.9 AET1Gv20879000.9 |
High | No | 3139 | OG0000268 | Get ORF Coding potential... Type: noncoding Potential: -0.567 Folding energies... MFEI: -30.191 AMFE: -0.658 GC content %: 45.874 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20879000.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET1Gv20879000.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET1Gv20879000.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET1Gv20879000.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET1Gv20879000.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET1Gv20879000.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET1Gv20879000.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
