GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET1Gv20879100 [ AET1Gv20879100]	1D	455103247	455109322	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET1Gv20879100.2 AET1Gv20879100.2	High	No	699	OG0069204		Get ORF Coding potential... Type: noncoding Potential: -0.575 Folding energies... MFEI: -25.680 AMFE: -0.619 GC content %: 41.488
Atauschii_AET1Gv20879100.9 AET1Gv20879100.9	High	No	436	OG0069205		Get ORF Coding potential... Type: noncoding Potential: -0.903 Folding energies... MFEI: -40.000 AMFE: -0.564 GC content %: 70.872

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).