Atauschii AET1Gv20880000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20880000 [ AET1Gv20880000] |
1D | 455421765 | 455428327 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20880000.1 AET1Gv20880000.1 |
High | No | 1360 | OG0000763 | Get ORF Coding potential... Type: noncoding Potential: -0.735 Folding energies... MFEI: -27.287 AMFE: -0.656 GC content %: 41.618 | |
| Atauschii_AET1Gv20880000.10 AET1Gv20880000.10 |
High | No | 2551 | OG0000763 | Get ORF Coding potential... Type: noncoding Potential: -0.887 Folding energies... MFEI: -27.950 AMFE: -0.615 GC content %: 45.433 | |
| Atauschii_AET1Gv20880000.11 AET1Gv20880000.11 |
High | No | 2764 | OG0000763 | Get ORF Coding potential... Type: noncoding Potential: -0.893 Folding energies... MFEI: -27.192 AMFE: -0.616 GC content %: 44.175 | |
| Atauschii_AET1Gv20880000.13 AET1Gv20880000.13 |
High | No | 2670 | OG0000763 | Get ORF Coding potential... Type: noncoding Potential: -0.890 Folding energies... MFEI: -27.704 AMFE: -0.634 GC content %: 43.670 | |
| Atauschii_AET1Gv20880000.14 AET1Gv20880000.14 |
High | No | 3127 | OG0000763 | Get ORF Coding potential... Type: noncoding Potential: -0.808 Folding energies... MFEI: -26.975 AMFE: -0.624 GC content %: 43.204 | |
| Atauschii_AET1Gv20880000.15 AET1Gv20880000.15 |
High | No | 1296 | OG0000763 | Get ORF Coding potential... Type: noncoding Potential: -0.891 Folding energies... MFEI: -24.830 AMFE: -0.633 GC content %: 39.198 | |
| Atauschii_AET1Gv20880000.17 AET1Gv20880000.17 |
High | No | 2070 | OG0000763 | Get ORF Coding potential... Type: noncoding Potential: -0.869 Folding energies... MFEI: -28.889 AMFE: -0.616 GC content %: 46.860 | |
| Atauschii_AET1Gv20880000.18 AET1Gv20880000.18 |
High | No | 2470 | OG0000763 | Get ORF Coding potential... Type: noncoding Potential: -0.791 Folding energies... MFEI: -27.931 AMFE: -0.624 GC content %: 44.777 | |
| Atauschii_AET1Gv20880000.2 AET1Gv20880000.2 |
High | No | 2890 | OG0000763 | Get ORF Coding potential... Type: noncoding Potential: -0.802 Folding energies... MFEI: -27.703 AMFE: -0.615 GC content %: 45.017 | |
| Atauschii_AET1Gv20880000.3 AET1Gv20880000.3 |
High | No | 4055 | OG0000763 | Get ORF Coding potential... Type: noncoding Potential: -0.822 Folding energies... MFEI: -29.066 AMFE: -0.644 GC content %: 45.129 | |
| Atauschii_AET1Gv20880000.4 AET1Gv20880000.4 |
High | No | 2750 | OG0000763 | Get ORF Coding potential... Type: noncoding Potential: -0.799 Folding energies... MFEI: -29.200 AMFE: -0.682 GC content %: 42.800 | |
| Atauschii_AET1Gv20880000.5 AET1Gv20880000.5 |
High | No | 2692 | OG0000763 | Get ORF Coding potential... Type: noncoding Potential: -0.798 Folding energies... MFEI: -29.094 AMFE: -0.676 GC content %: 43.016 | |
| Atauschii_AET1Gv20880000.6 AET1Gv20880000.6 |
High | No | 3203 | OG0000763 | Get ORF Coding potential... Type: noncoding Potential: -0.809 Folding energies... MFEI: -28.017 AMFE: -0.673 GC content %: 41.648 | |
| Atauschii_AET1Gv20880000.7 AET1Gv20880000.7 |
High | No | 2715 | OG0000763 | Get ORF Coding potential... Type: noncoding Potential: -0.701 Folding energies... MFEI: -25.477 AMFE: -0.656 GC content %: 38.858 | |
| Atauschii_AET1Gv20880000.8 AET1Gv20880000.8 |
High | No | 2970 | OG0000763 | Get ORF Coding potential... Type: noncoding Potential: -0.804 Folding energies... MFEI: -27.673 AMFE: -0.626 GC content %: 44.175 | |
| Atauschii_AET1Gv20880000.9 AET1Gv20880000.9 |
High | No | 3271 | OG0000763 | Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -26.720 AMFE: -0.606 GC content %: 44.084 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
