GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET1Gv20883100 [ AET1Gv20883100]	1D	457021078	457027775	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET1Gv20883100.1 AET1Gv20883100.1	High	No	519	OG0015921		Get ORF Coding potential... Type: noncoding Potential: -1.108 Folding energies... MFEI: -28.439 AMFE: -0.633 GC content %: 44.894
Atauschii_AET1Gv20883100.11 AET1Gv20883100.11	High	No	219	OG0069211		Get ORF Coding potential... Type: noncoding Potential: -0.830 Folding energies... MFEI: -24.110 AMFE: -0.593 GC content %: 40.639
Atauschii_AET1Gv20883100.4 AET1Gv20883100.4	Low	No	644	OG0015921		Get ORF Coding potential... Type: noncoding Potential: -0.539 Folding energies... MFEI: -31.351 AMFE: -0.596 GC content %: 52.640

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET1Gv20883100.4	SwissProt	2021-04-01	Q947D2	1.01e-10

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).