Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20884300 [ AET1Gv20884300] |
1D | 457831807 | 457837070 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20884300.1 AET1Gv20884300.1 |
Low | No | 3991 | OG0009763 | Get ORF Coding potential... Type: noncoding Potential: -0.976 Folding energies... MFEI: -27.910 AMFE: -0.650 GC content %: 42.947 | |
Atauschii_AET1Gv20884300.2 AET1Gv20884300.2 |
Low | No | 4393 | OG0009763 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -27.348 AMFE: -0.650 GC content %: 42.067 | |
Atauschii_AET1Gv20884300.3 AET1Gv20884300.3 |
Low | No | 2106 | OG0009763 | Get ORF Coding potential... Type: noncoding Potential: -1.000 Folding energies... MFEI: -27.468 AMFE: -0.665 GC content %: 41.311 | |
Atauschii_AET1Gv20884300.4 AET1Gv20884300.4 |
High | No | 1643 | OG0009763 | Get ORF Coding potential... Type: noncoding Potential: -0.981 Folding energies... MFEI: -27.089 AMFE: -0.647 GC content %: 41.875 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET1Gv20884300.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Pao | |
Atauschii_AET1Gv20884300.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Pao | |
Atauschii_AET1Gv20884300.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Pao |