Atauschii AET1Gv20886900
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20886900 [ AET1Gv20886900] |
1D | 458620913 | 458629063 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20886900.1 AET1Gv20886900.1 |
Low | No | 1195 | OG0001534 | Get ORF Coding potential... Type: noncoding Potential: -0.275 Folding energies... MFEI: -36.519 AMFE: -0.655 GC content %: 55.732 | |
| Atauschii_AET1Gv20886900.11 AET1Gv20886900.11 |
High | No | 462 | OG0001534 | Get ORF Coding potential... Type: noncoding Potential: -1.107 Folding energies... MFEI: -26.580 AMFE: -0.532 GC content %: 50.000 | |
| Atauschii_AET1Gv20886900.14 AET1Gv20886900.14 |
Low | No | 1482 | OG0001534 | Get ORF Coding potential... Type: noncoding Potential: -0.025 Folding energies... MFEI: -35.243 AMFE: -0.656 GC content %: 53.711 | |
| Atauschii_AET1Gv20886900.16 AET1Gv20886900.16 |
Low | No | 928 | OG0001534 | Get ORF Coding potential... Type: noncoding Potential: -1.231 Folding energies... MFEI: -38.922 AMFE: -0.653 GC content %: 59.591 | |
| Atauschii_AET1Gv20886900.20 AET1Gv20886900.20 |
Low | No | 517 | OG0069220 | Get ORF Coding potential... Type: noncoding Potential: -0.126 Folding energies... MFEI: -33.501 AMFE: -0.639 GC content %: 52.418 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20886900.20 | SwissProt | 2021-04-01 | Q9FHF1 | 2.06e-21 |
| Atauschii_AET1Gv20886900.1 | SwissProt | 2021-04-01 | Q9FHF1 | 8.66e-21 |
| Atauschii_AET1Gv20886900.14 | SwissProt | 2021-04-01 | Q9FHF1 | 2.52e-26 |
| Atauschii_AET1Gv20886900.16 | SwissProt | 2021-04-01 | Q9M0M2 | 1.16e-7 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
