Atauschii AET1Gv20894900
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20894900 [ AET1Gv20894900] |
1D | 461027354 | 461031471 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20894900.1 AET1Gv20894900.1 |
Low | No | 1589 | OG0002854 | Get ORF Coding potential... Type: noncoding Potential: -0.473 Folding energies... MFEI: -34.116 AMFE: -0.651 GC content %: 52.423 | |
| Atauschii_AET1Gv20894900.2 AET1Gv20894900.2 |
Low | No | 2247 | OG0002854 | Get ORF Coding potential... Type: noncoding Potential: -1.219 Folding energies... MFEI: -30.712 AMFE: -0.647 GC content %: 47.441 | |
| Atauschii_AET1Gv20894900.3 AET1Gv20894900.3 |
Low | No | 1730 | OG0002854 | Get ORF Coding potential... Type: noncoding Potential: -0.480 Folding energies... MFEI: -34.908 AMFE: -0.659 GC content %: 53.006 | |
| Atauschii_AET1Gv20894900.4 AET1Gv20894900.4 |
Low | No | 2330 | OG0002854 | Get ORF Coding potential... Type: noncoding Potential: -0.511 Folding energies... MFEI: -30.382 AMFE: -0.646 GC content %: 46.996 | |
| Atauschii_AET1Gv20894900.5 AET1Gv20894900.5 |
Low | No | 2226 | OG0002854 | Get ORF Coding potential... Type: noncoding Potential: -0.508 Folding energies... MFEI: -30.606 AMFE: -0.647 GC content %: 47.305 | |
| Atauschii_AET1Gv20894900.6 AET1Gv20894900.6 |
Low | No | 2082 | OG0002854 | Get ORF Coding potential... Type: noncoding Potential: -0.503 Folding energies... MFEI: -27.181 AMFE: -0.645 GC content %: 42.123 | |
| Atauschii_AET1Gv20894900.7 AET1Gv20894900.7 |
Low | No | 880 | OG0002854 | Get ORF Coding potential... Type: noncoding Potential: -1.120 Folding energies... MFEI: -33.523 AMFE: -0.653 GC content %: 51.364 | |
| Atauschii_AET1Gv20894900.8 AET1Gv20894900.8 |
Low | No | 1384 | OG0002854 | Get ORF Coding potential... Type: noncoding Potential: -0.446 Folding energies... MFEI: -33.728 AMFE: -0.638 GC content %: 52.890 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20894900.8 | SwissProt | 2021-04-01 | P51105 | 3.63e-5 |
| Atauschii_AET1Gv20894900.3 | SwissProt | 2021-04-01 | P51105 | 5.08e-5 |
| Atauschii_AET1Gv20894900.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET1Gv20894900.4 | SwissProt | 2021-04-01 | P51105 | 7.59e-5 |
| Atauschii_AET1Gv20894900.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET1Gv20894900.5 | SwissProt | 2021-04-01 | P51105 | 7.15e-5 |
| Atauschii_AET1Gv20894900.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET1Gv20894900.6 | SwissProt | 2021-04-01 | P51105 | 6.55e-5 |
| Atauschii_AET1Gv20894900.1 | SwissProt | 2021-04-01 | P51105 | 4.49e-5 |
| Atauschii_AET1Gv20894900.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
