Atauschii AET1Gv20895000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20895000 [ AET1Gv20895000] |
1D | 461027354 | 461031471 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20895000.1 AET1Gv20895000.1 |
Low | No | 1028 | OG0000490 | Get ORF Coding potential... Type: noncoding Potential: -1.342 Folding energies... MFEI: -29.747 AMFE: -0.628 GC content %: 47.374 | |
| Atauschii_AET1Gv20895000.12 AET1Gv20895000.12 |
Low | No | 2229 | OG0000490 | Get ORF Coding potential... Type: noncoding Potential: -1.256 Folding energies... MFEI: -31.830 AMFE: -0.673 GC content %: 47.331 | |
| Atauschii_AET1Gv20895000.13 AET1Gv20895000.13 |
Low | No | 1075 | OG0000490 | Get ORF Coding potential... Type: noncoding Potential: -1.375 Folding energies... MFEI: -29.684 AMFE: -0.626 GC content %: 47.442 | |
| Atauschii_AET1Gv20895000.14 AET1Gv20895000.14 |
Low | No | 1178 | OG0000490 | Get ORF Coding potential... Type: noncoding Potential: -1.252 Folding energies... MFEI: -38.735 AMFE: -0.689 GC content %: 56.197 | |
| Atauschii_AET1Gv20895000.17 AET1Gv20895000.17 |
Low | No | 1738 | OG0000490 | Get ORF Coding potential... Type: noncoding Potential: -1.237 Folding energies... MFEI: -26.588 AMFE: -0.624 GC content %: 42.635 | |
| Atauschii_AET1Gv20895000.18 AET1Gv20895000.18 |
Low | No | 1019 | OG0000490 | Get ORF Coding potential... Type: noncoding Potential: -0.385 Folding energies... MFEI: -37.380 AMFE: -0.677 GC content %: 55.250 | |
| Atauschii_AET1Gv20895000.19 AET1Gv20895000.19 |
Low | No | 1133 | OG0000490 | Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -37.237 AMFE: -0.680 GC content %: 54.722 | |
| Atauschii_AET1Gv20895000.2 AET1Gv20895000.2 |
Low | No | 1513 | OG0000490 | Get ORF Coding potential... Type: noncoding Potential: -1.224 Folding energies... MFEI: -36.107 AMFE: -0.678 GC content %: 53.272 | |
| Atauschii_AET1Gv20895000.20 AET1Gv20895000.20 |
Low | No | 1176 | OG0000490 | Get ORF Coding potential... Type: noncoding Potential: -0.458 Folding energies... MFEI: -26.777 AMFE: -0.674 GC content %: 39.711 | |
| Atauschii_AET1Gv20895000.21 AET1Gv20895000.21 |
Low | No | 1501 | OG0000490 | Get ORF Coding potential... Type: noncoding Potential: -1.184 Folding energies... MFEI: -33.071 AMFE: -0.692 GC content %: 47.768 | |
| Atauschii_AET1Gv20895000.22 AET1Gv20895000.22 |
Low | No | 1487 | OG0000490 | Get ORF Coding potential... Type: noncoding Potential: -1.183 Folding energies... MFEI: -33.665 AMFE: -0.700 GC content %: 48.083 | |
| Atauschii_AET1Gv20895000.25 AET1Gv20895000.25 |
Low | No | 1028 | OG0000490 | Get ORF Coding potential... Type: noncoding Potential: -0.431 Folding energies... MFEI: -35.924 AMFE: -0.688 GC content %: 52.237 | |
| Atauschii_AET1Gv20895000.26 AET1Gv20895000.26 |
Low | No | 1206 | OG0000490 | Get ORF Coding potential... Type: noncoding Potential: -0.451 Folding energies... MFEI: -34.668 AMFE: -0.671 GC content %: 51.658 | |
| Atauschii_AET1Gv20895000.27 AET1Gv20895000.27 |
Low | No | 899 | OG0000490 | Get ORF Coding potential... Type: noncoding Potential: -0.397 Folding energies... MFEI: -37.319 AMFE: -0.678 GC content %: 55.061 | |
| Atauschii_AET1Gv20895000.28 AET1Gv20895000.28 |
Low | No | 746 | OG0000490 | Get ORF Coding potential... Type: noncoding Potential: -0.336 Folding energies... MFEI: -26.367 AMFE: -0.635 GC content %: 41.555 | |
| Atauschii_AET1Gv20895000.29 AET1Gv20895000.29 |
High | No | 452 | OG0000490 | Get ORF Coding potential... Type: noncoding Potential: -1.206 Folding energies... MFEI: -45.000 AMFE: -0.674 GC content %: 66.814 | |
| Atauschii_AET1Gv20895000.6 AET1Gv20895000.6 |
Low | No | 1416 | OG0000490 | Get ORF Coding potential... Type: noncoding Potential: -1.197 Folding energies... MFEI: -36.596 AMFE: -0.677 GC content %: 54.025 | |
| Atauschii_AET1Gv20895000.7 AET1Gv20895000.7 |
Low | No | 1021 | OG0000490 | Get ORF Coding potential... Type: noncoding Potential: -1.341 Folding energies... MFEI: -30.186 AMFE: -0.625 GC content %: 48.286 | |
| Atauschii_AET1Gv20895000.9 AET1Gv20895000.9 |
Low | No | 1336 | OG0000490 | Get ORF Coding potential... Type: noncoding Potential: -1.301 Folding energies... MFEI: -37.440 AMFE: -0.685 GC content %: 54.641 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20895000.13 | SwissProt | 2021-04-01 | Q6WWW4 | 3.75e-10 |
| Atauschii_AET1Gv20895000.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET1Gv20895000.27 | SwissProt | 2021-04-01 | Q6WWW4 | 5.85e-11 |
| Atauschii_AET1Gv20895000.20 | SwissProt | 2021-04-01 | Q6WWW4 | 9.23e-11 |
| Atauschii_AET1Gv20895000.14 | SwissProt | 2021-04-01 | Q6WWW4 | 4.24e-10 |
| Atauschii_AET1Gv20895000.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET1Gv20895000.28 | SwissProt | 2021-04-01 | Q6WWW4 | 3.19e-11 |
| Atauschii_AET1Gv20895000.21 | SwissProt | 2021-04-01 | Q6WWW4 | 1.26e-10 |
| Atauschii_AET1Gv20895000.17 | SwissProt | 2021-04-01 | Q6WWW4 | 6.92e-10 |
| Atauschii_AET1Gv20895000.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
