Atauschii AET1Gv20941000
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20941000 [ AET1Gv20941000] |
1D | 473240180 | 473265397 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20941000.1 AET1Gv20941000.1 |
Low | No | 1326 | OG0001877 | Get ORF Coding potential... Type: noncoding Potential: -0.918 Folding energies... MFEI: -29.374 AMFE: -0.686 GC content %: 42.836 | |
| Atauschii_AET1Gv20941000.2 AET1Gv20941000.2 |
Low | No | 946 | OG0001877 | Get ORF Coding potential... Type: noncoding Potential: -0.738 Folding energies... MFEI: -27.696 AMFE: -0.621 GC content %: 44.609 | |
| Atauschii_AET1Gv20941000.3 AET1Gv20941000.3 |
Low | No | 1591 | OG0001877 | Get ORF Coding potential... Type: noncoding Potential: -0.842 Folding energies... MFEI: -28.127 AMFE: -0.664 GC content %: 42.363 | |
| Atauschii_AET1Gv20941000.4 AET1Gv20941000.4 |
Low | Yes | 1458 | OG0001877 | Get ORF Coding potential... Type: noncoding Potential: -0.928 Folding energies... MFEI: -28.546 AMFE: -0.637 GC content %: 44.787 | |
| Atauschii_AET1Gv20941000.5 AET1Gv20941000.5 |
Low | Yes | 1938 | OG0001877 | Get ORF Coding potential... Type: noncoding Potential: -0.696 Folding energies... MFEI: -27.518 AMFE: -0.657 GC content %: 41.899 | |
| Atauschii_AET1Gv20941000.6 AET1Gv20941000.6 |
Low | No | 1782 | OG0001877 | Get ORF Coding potential... Type: noncoding Potential: -0.947 Folding energies... MFEI: -30.595 AMFE: -0.624 GC content %: 49.046 | |
| Atauschii_AET1Gv20941000.7 AET1Gv20941000.7 |
Low | No | 1276 | OG0001877 | Get ORF Coding potential... Type: noncoding Potential: -0.642 Folding energies... MFEI: -28.033 AMFE: -0.621 GC content %: 45.141 | |
| Atauschii_AET1Gv20941000.8 AET1Gv20941000.8 |
Low | No | 1219 | OG0001877 | Get ORF Coding potential... Type: noncoding Potential: -0.636 Folding energies... MFEI: -32.592 AMFE: -0.678 GC content %: 48.072 | |
| Atauschii_AET1Gv20941000.9 AET1Gv20941000.9 |
High | No | 833 | OG0069315 | Get ORF Coding potential... Type: noncoding Potential: -1.146 Folding energies... MFEI: -23.553 AMFE: -0.645 GC content %: 36.495 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20941000.8 | SwissProt | 2021-04-01 | Q9BY12 | 6.07e-8 |
| Atauschii_AET1Gv20941000.3 | SwissProt | 2021-04-01 | Q9BY12 | 1.53e-7 |
| Atauschii_AET1Gv20941000.4 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET1Gv20941000.4 | Rfam | 14.6 | mir-239 | 0.0034 |
| Atauschii_AET1Gv20941000.4 | SwissProt | 2021-04-01 | Q9BY12 | 5.31e-4 |
| Atauschii_AET1Gv20941000.5 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET1Gv20941000.5 | Rfam | 14.6 | mir-239 | 0.0045 |
| Atauschii_AET1Gv20941000.5 | SwissProt | 2021-04-01 | Q9BY12 | 1.85e-7 |
| Atauschii_AET1Gv20941000.6 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET1Gv20941000.1 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
