Atauschii AET1Gv20946400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20946400 [ AET1Gv20946400] |
1D | 475059307 | 475109291 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20946400.11 AET1Gv20946400.11 |
High | No | 696 | OG0024472 | Get ORF Coding potential... Type: noncoding Potential: -0.471 Folding energies... MFEI: -30.474 AMFE: -0.618 GC content %: 49.282 | |
| Atauschii_AET1Gv20946400.13 AET1Gv20946400.13 |
High | No | 649 | OG0024472 | Get ORF Coding potential... Type: noncoding Potential: -0.566 Folding energies... MFEI: -30.801 AMFE: -0.619 GC content %: 49.769 | |
| Atauschii_AET1Gv20946400.4 AET1Gv20946400.4 |
High | No | 675 | OG0006806 | Get ORF Coding potential... Type: noncoding Potential: -0.202 Folding energies... MFEI: -31.526 AMFE: -0.667 GC content %: 47.259 | |
| Atauschii_AET1Gv20946400.5 AET1Gv20946400.5 |
High | No | 696 | OG0006806 | Get ORF Coding potential... Type: noncoding Potential: -0.147 Folding energies... MFEI: -29.799 AMFE: -0.615 GC content %: 48.420 | |
| Atauschii_AET1Gv20946400.6 AET1Gv20946400.6 |
High | No | 696 | OG0006806 | Get ORF Coding potential... Type: noncoding Potential: -0.147 Folding energies... MFEI: -29.799 AMFE: -0.615 GC content %: 48.420 | |
| Atauschii_AET1Gv20946400.8 AET1Gv20946400.8 |
High | No | 817 | OG0069333 | Get ORF Coding potential... Type: noncoding Potential: -0.162 Folding energies... MFEI: -30.184 AMFE: -0.609 GC content %: 49.572 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
