Atauschii AET1Gv20958900
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20958900 [ AET1Gv20958900] |
1D | 478749058 | 478755179 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20958900.1 AET1Gv20958900.1 |
Low | No | 915 | OG0004645 | Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -29.005 AMFE: -0.691 GC content %: 41.967 | |
| Atauschii_AET1Gv20958900.2 AET1Gv20958900.2 |
Low | No | 1108 | OG0004645 | Get ORF Coding potential... Type: noncoding Potential: -0.291 Folding energies... MFEI: -29.666 AMFE: -0.698 GC content %: 42.509 | |
| Atauschii_AET1Gv20958900.3 AET1Gv20958900.3 |
Low | No | 2359 | OG0004645 | Get ORF Coding potential... Type: noncoding Potential: -0.397 Folding energies... MFEI: -26.829 AMFE: -0.631 GC content %: 42.518 | |
| Atauschii_AET1Gv20958900.4 AET1Gv20958900.4 |
Low | No | 2397 | OG0004645 | Get ORF Coding potential... Type: noncoding Potential: -0.400 Folding energies... MFEI: -27.263 AMFE: -0.641 GC content %: 42.511 | |
| Atauschii_AET1Gv20958900.6 AET1Gv20958900.6 |
Low | No | 3024 | OG0004645 | Get ORF Coding potential... Type: noncoding Potential: -0.144 Folding energies... MFEI: -28.737 AMFE: -0.668 GC content %: 43.022 | |
| Atauschii_AET1Gv20958900.9 AET1Gv20958900.9 |
Low | No | 1247 | OG0004645 | Get ORF Coding potential... Type: noncoding Potential: -1.011 Folding energies... MFEI: -29.832 AMFE: -0.689 GC content %: 43.304 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20958900.1 | SwissProt | 2021-04-01 | Q9ZW02 | 3.86e-8 |
| Atauschii_AET1Gv20958900.6 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Atauschii_AET1Gv20958900.2 | SwissProt | 2021-04-01 | Q9ZW02 | 1.62e-12 |
| Atauschii_AET1Gv20958900.9 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Atauschii_AET1Gv20958900.3 | SwissProt | 2021-04-01 | Q9ZW02 | 6.48e-12 |
| Atauschii_AET1Gv20958900.4 | SwissProt | 2021-04-01 | Q9ZW02 | 6.6e-12 |
| Atauschii_AET1Gv20958900.6 | SwissProt | 2021-04-01 | Q9ZW07 | 1.46e-5 |
| Atauschii_AET1Gv20958900.9 | SwissProt | 2021-04-01 | Q9SS47 | 2.1e-8 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
