GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET1Gv21000500 [ AET1Gv21000500]	1D	488632020	488638936	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET1Gv21000500.16 AET1Gv21000500.16	Low	No	1242	OG0069432		Get ORF Coding potential... Type: coding Potential: 0.268 Folding energies... MFEI: -27.770 AMFE: -0.666 GC content %: 41.707
Atauschii_AET1Gv21000500.17 AET1Gv21000500.17	High	No	681	OG0024489		Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -29.985 AMFE: -0.621 GC content %: 48.311
Atauschii_AET1Gv21000500.18 AET1Gv21000500.18	High	No	620	OG0024489		Get ORF Coding potential... Type: noncoding Potential: -0.873 Folding energies... MFEI: -30.419 AMFE: -0.627 GC content %: 48.548

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).