GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET1Gv21006600 [ AET1Gv21006600]	1D	490251856	490274263	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET1Gv21006600.14 AET1Gv21006600.14	High	No	207	OG0006812		Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -25.990 AMFE: -0.618 GC content %: 42.029
Atauschii_AET1Gv21006600.35 AET1Gv21006600.35	High	No	621	OG0069443		Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -26.039 AMFE: -0.634 GC content %: 41.063
Atauschii_AET1Gv21006600.37 AET1Gv21006600.37	High	No	336	OG0069444		Get ORF Coding potential... Type: noncoding Potential: -0.683 Folding energies... MFEI: -28.988 AMFE: -0.641 GC content %: 45.238

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).