Atauschii AET1Gv21012200
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv21012200 [ AET1Gv21012200] |
1D | 491413987 | 491420816 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv21012200.1 AET1Gv21012200.1 |
High | No | 471 | OG0069455 | Get ORF Coding potential... Type: noncoding Potential: -0.507 Folding energies... MFEI: -36.476 AMFE: -0.501 GC content %: 72.824 | |
| Atauschii_AET1Gv21012200.11 AET1Gv21012200.11 |
High | No | 2395 | OG0002338 | Get ORF Coding potential... Type: noncoding Potential: -0.717 Folding energies... MFEI: -28.126 AMFE: -0.600 GC content %: 46.848 | |
| Atauschii_AET1Gv21012200.13 AET1Gv21012200.13 |
High | No | 2086 | OG0002338 | Get ORF Coding potential... Type: noncoding Potential: -0.706 Folding energies... MFEI: -28.883 AMFE: -0.594 GC content %: 48.610 | |
| Atauschii_AET1Gv21012200.19 AET1Gv21012200.19 |
High | No | 955 | OG0002338 | Get ORF Coding potential... Type: noncoding Potential: -0.377 Folding energies... MFEI: -29.759 AMFE: -0.637 GC content %: 46.702 | |
| Atauschii_AET1Gv21012200.20 AET1Gv21012200.20 |
High | No | 792 | OG0002338 | Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -28.813 AMFE: -0.702 GC content %: 41.035 | |
| Atauschii_AET1Gv21012200.23 AET1Gv21012200.23 |
High | No | 738 | OG0002338 | Get ORF Coding potential... Type: noncoding Potential: -0.656 Folding energies... MFEI: -26.694 AMFE: -0.633 GC content %: 42.141 | |
| Atauschii_AET1Gv21012200.29 AET1Gv21012200.29 |
High | No | 1182 | OG0002338 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -24.518 AMFE: -0.601 GC content %: 40.778 | |
| Atauschii_AET1Gv21012200.3 AET1Gv21012200.3 |
High | No | 2444 | OG0002338 | Get ORF Coding potential... Type: noncoding Potential: -0.719 Folding energies... MFEI: -28.020 AMFE: -0.599 GC content %: 46.768 | |
| Atauschii_AET1Gv21012200.8 AET1Gv21012200.8 |
High | No | 2172 | OG0002338 | Get ORF Coding potential... Type: noncoding Potential: -0.709 Folding energies... MFEI: -28.066 AMFE: -0.598 GC content %: 46.915 | |
| Atauschii_AET1Gv21012200.9 AET1Gv21012200.9 |
High | No | 1486 | OG0002338 | Get ORF Coding potential... Type: noncoding Potential: -0.673 Folding energies... MFEI: -29.455 AMFE: -0.577 GC content %: 51.009 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
