GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv20046700 [ AET2Gv20046700]	2D	10663458	10679502	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv20046700.15 AET2Gv20046700.15	High	No	797	OG0024512		Get ORF Coding potential... Type: noncoding Potential: -1.085 Folding energies... MFEI: -26.826 AMFE: -0.656 GC content %: 40.903
Atauschii_AET2Gv20046700.3 AET2Gv20046700.3	High	No	869	OG0024512		Get ORF Coding potential... Type: noncoding Potential: -0.936 Folding energies... MFEI: -27.825 AMFE: -0.672 GC content %: 41.427
Atauschii_AET2Gv20046700.39 AET2Gv20046700.39	High	No	631	OG0069616		Get ORF Coding potential... Type: noncoding Potential: -0.610 Folding energies... MFEI: -30.032 AMFE: -0.707 GC content %: 42.472
Atauschii_AET2Gv20046700.40 AET2Gv20046700.40	High	No	252	OG0015954		Get ORF Coding potential... Type: noncoding Potential: -0.908 Folding energies... MFEI: -27.976 AMFE: -0.618 GC content %: 45.238

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).