GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv20061100 [ AET2Gv20061100]	2D	13726241	13750771	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv20061100.13 AET2Gv20061100.13	High	No	934	OG0024520		Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -29.133 AMFE: -0.627 GC content %: 46.467
Atauschii_AET2Gv20061100.23 AET2Gv20061100.23	High	No	1219	OG0069640		Get ORF Coding potential... Type: noncoding Potential: -1.267 Folding energies... MFEI: -21.132 AMFE: -0.594 GC content %: 35.603
Atauschii_AET2Gv20061100.4 AET2Gv20061100.4	High	No	493	OG0024520		Get ORF Coding potential... Type: noncoding Potential: -1.132 Folding energies... MFEI: -30.467 AMFE: -0.569 GC content %: 53.550

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).