Atauschii AET2Gv20065500
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20065500 [ AET2Gv20065500] |
2D | 14496512 | 14502172 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20065500.10 AET2Gv20065500.10 |
High | No | 780 | OG0001142 | Get ORF Coding potential... Type: noncoding Potential: -0.857 Folding energies... MFEI: -29.167 AMFE: -0.639 GC content %: 45.641 | |
| Atauschii_AET2Gv20065500.11 AET2Gv20065500.11 |
High | No | 1138 | OG0001142 | Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -25.879 AMFE: -0.640 GC content %: 40.422 | |
| Atauschii_AET2Gv20065500.12 AET2Gv20065500.12 |
High | No | 553 | OG0001142 | Get ORF Coding potential... Type: noncoding Potential: -0.290 Folding energies... MFEI: -27.667 AMFE: -0.614 GC content %: 45.027 | |
| Atauschii_AET2Gv20065500.13 AET2Gv20065500.13 |
High | No | 426 | OG0069648 | Get ORF Coding potential... Type: noncoding Potential: -0.215 Folding energies... MFEI: -21.174 AMFE: -0.586 GC content %: 36.150 | |
| Atauschii_AET2Gv20065500.14 AET2Gv20065500.14 |
High | No | 456 | OG0001142 | Get ORF Coding potential... Type: noncoding Potential: -0.704 Folding energies... MFEI: -27.829 AMFE: -0.634 GC content %: 43.860 | |
| Atauschii_AET2Gv20065500.15 AET2Gv20065500.15 |
High | No | 577 | OG0001142 | Get ORF Coding potential... Type: noncoding Potential: -0.635 Folding energies... MFEI: -23.293 AMFE: -0.587 GC content %: 39.688 | |
| Atauschii_AET2Gv20065500.16 AET2Gv20065500.16 |
High | No | 469 | OG0001142 | Get ORF Coding potential... Type: noncoding Potential: -0.242 Folding energies... MFEI: -27.100 AMFE: -0.614 GC content %: 44.136 | |
| Atauschii_AET2Gv20065500.17 AET2Gv20065500.17 |
High | No | 1130 | OG0001142 | Get ORF Coding potential... Type: noncoding Potential: -0.719 Folding energies... MFEI: -23.973 AMFE: -0.672 GC content %: 35.664 | |
| Atauschii_AET2Gv20065500.18 AET2Gv20065500.18 |
High | No | 951 | OG0001142 | Get ORF Coding potential... Type: noncoding Potential: -1.153 Folding energies... MFEI: -25.657 AMFE: -0.687 GC content %: 37.329 | |
| Atauschii_AET2Gv20065500.19 AET2Gv20065500.19 |
High | No | 854 | OG0001142 | Get ORF Coding potential... Type: noncoding Potential: -0.751 Folding energies... MFEI: -20.761 AMFE: -0.633 GC content %: 32.787 | |
| Atauschii_AET2Gv20065500.2 AET2Gv20065500.2 |
High | No | 939 | OG0001142 | Get ORF Coding potential... Type: noncoding Potential: -0.430 Folding energies... MFEI: -27.103 AMFE: -0.639 GC content %: 42.386 | |
| Atauschii_AET2Gv20065500.4 AET2Gv20065500.4 |
High | No | 1258 | OG0001142 | Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -24.626 AMFE: -0.637 GC content %: 38.633 | |
| Atauschii_AET2Gv20065500.8 AET2Gv20065500.8 |
High | No | 2002 | OG0001142 | Get ORF Coding potential... Type: noncoding Potential: -0.620 Folding energies... MFEI: -25.365 AMFE: -0.672 GC content %: 37.762 | |
| Atauschii_AET2Gv20065500.9 AET2Gv20065500.9 |
High | No | 1387 | OG0001142 | Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -24.174 AMFE: -0.651 GC content %: 37.130 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
