GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv20074700 [ AET2Gv20074700]	2D	16592348	16597497	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv20074700.1 AET2Gv20074700.1	High	No	351	OG0069671		Get ORF Coding potential... Type: noncoding Potential: -1.212 Folding energies... MFEI: -25.726 AMFE: -0.640 GC content %: 40.171
Atauschii_AET2Gv20074700.17 AET2Gv20074700.17	Low	No	235	OG0069672		Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -28.298 AMFE: -0.583 GC content %: 48.511
Atauschii_AET2Gv20074700.20 AET2Gv20074700.20	High	No	423	OG0069673		Get ORF Coding potential... Type: noncoding Potential: -1.480 Folding energies... MFEI: -35.012 AMFE: -0.581 GC content %: 60.284

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET2Gv20074700.17	SwissProt	2021-04-01	Q3ECP7	2.62e-7

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).