GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv20079700 [ AET2Gv20079700]	2D	17872356	17873164	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv20079700.1 AET2Gv20079700.1	High	No	409	OG0015959		Get ORF Coding potential... Type: noncoding Potential: -0.837 Folding energies... MFEI: -25.403 AMFE: -0.645 GC content %: 39.364
Atauschii_AET2Gv20079700.2 AET2Gv20079700.2	High	No	348	OG0015959		Get ORF Coding potential... Type: noncoding Potential: -0.693 Folding energies... MFEI: -26.006 AMFE: -0.603 GC content %: 43.103
Atauschii_AET2Gv20079700.3 AET2Gv20079700.3	High	No	522	OG0015959		Get ORF Coding potential... Type: noncoding Potential: -0.764 Folding energies... MFEI: -24.981 AMFE: -0.615 GC content %: 40.613

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).