Atauschii AET2Gv20114300
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20114300 [ AET2Gv20114300] |
2D | 26181929 | 26390878 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20114300.1 AET2Gv20114300.1 |
High | No | 801 | OG0004652 | Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -27.141 AMFE: -0.589 GC content %: 46.067 | |
| Atauschii_AET2Gv20114300.12 AET2Gv20114300.12 |
Low | No | 447 | OG0069718 | Get ORF Coding potential... Type: noncoding Potential: -0.854 Folding energies... MFEI: -35.414 AMFE: -0.621 GC content %: 57.047 | |
| Atauschii_AET2Gv20114300.13 AET2Gv20114300.13 |
High | No | 209 | OG0069719 | Get ORF Coding potential... Type: noncoding Potential: -0.712 Folding energies... MFEI: -38.517 AMFE: -0.639 GC content %: 60.287 | |
| Atauschii_AET2Gv20114300.15 AET2Gv20114300.15 |
High | No | 697 | OG0004652 | Get ORF Coding potential... Type: noncoding Potential: -0.354 Folding energies... MFEI: -35.280 AMFE: -0.597 GC content %: 59.110 | |
| Atauschii_AET2Gv20114300.16 AET2Gv20114300.16 |
High | No | 630 | OG0069720 | Get ORF Coding potential... Type: noncoding Potential: -0.455 Folding energies... MFEI: -36.190 AMFE: -0.589 GC content %: 61.429 | |
| Atauschii_AET2Gv20114300.19 AET2Gv20114300.19 |
Low | No | 972 | OG0004652 | Get ORF Coding potential... Type: noncoding Potential: -0.388 Folding energies... MFEI: -36.698 AMFE: -0.611 GC content %: 60.082 | |
| Atauschii_AET2Gv20114300.21 AET2Gv20114300.21 |
High | No | 393 | OG0069721 | Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -34.580 AMFE: -0.583 GC content %: 59.288 | |
| Atauschii_AET2Gv20114300.4 AET2Gv20114300.4 |
High | No | 940 | OG0004652 | Get ORF Coding potential... Type: noncoding Potential: -0.519 Folding energies... MFEI: -30.628 AMFE: -0.569 GC content %: 53.830 | |
| Atauschii_AET2Gv20114300.5 AET2Gv20114300.5 |
High | No | 1013 | OG0004652 | Get ORF Coding potential... Type: noncoding Potential: -0.272 Folding energies... MFEI: -31.994 AMFE: -0.587 GC content %: 54.492 | |
| Atauschii_AET2Gv20114300.7 AET2Gv20114300.7 |
High | No | 711 | OG0004652 | Get ORF Coding potential... Type: noncoding Potential: -0.265 Folding energies... MFEI: -35.485 AMFE: -0.567 GC content %: 62.588 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20114300.19 | SwissProt | 2021-04-01 | Q9T0I5 | 3.94e-5 |
| Atauschii_AET2Gv20114300.12 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
