Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20116700 [ AET2Gv20116700] |
2D | 26688052 | 26726671 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20116700.13 AET2Gv20116700.13 |
High | No | 753 | OG0000321 | Get ORF Coding potential... Type: noncoding Potential: -1.386 Folding energies... MFEI: -22.032 AMFE: -0.612 GC content %: 35.989 | |
Atauschii_AET2Gv20116700.14 AET2Gv20116700.14 |
High | No | 1325 | OG0000321 | Get ORF Coding potential... Type: noncoding Potential: -1.181 Folding energies... MFEI: -24.672 AMFE: -0.673 GC content %: 36.679 | |
Atauschii_AET2Gv20116700.31 AET2Gv20116700.31 |
High | No | 716 | OG0069725 | Get ORF Coding potential... Type: noncoding Potential: -0.918 Folding energies... MFEI: -25.559 AMFE: -0.640 GC content %: 39.944 | |
Atauschii_AET2Gv20116700.37 AET2Gv20116700.37 |
Low | No | 1201 | OG0069726 | Get ORF Coding potential... Type: noncoding Potential: -0.726 Folding energies... MFEI: -28.551 AMFE: -0.661 GC content %: 43.214 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET2Gv20116700.37 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |