Atauschii AET2Gv20133800
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20133800 [ AET2Gv20133800] |
2D | 30460825 | 30712921 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20133800.1 AET2Gv20133800.1 |
High | No | 449 | OG0002858 | Get ORF Coding potential... Type: noncoding Potential: -0.932 Folding energies... MFEI: -39.621 AMFE: -0.671 GC content %: 59.020 | |
| Atauschii_AET2Gv20133800.5 AET2Gv20133800.5 |
High | No | 706 | OG0024540 | Get ORF Coding potential... Type: noncoding Potential: -0.064 Folding energies... MFEI: -40.737 AMFE: -0.690 GC content %: 59.065 | |
| Atauschii_AET2Gv20133800.8 AET2Gv20133800.8 |
High | No | 513 | OG0002858 | Get ORF Coding potential... Type: noncoding Potential: -0.480 Folding energies... MFEI: -30.448 AMFE: -0.635 GC content %: 47.953 | |
| Atauschii_AET2Gv20133800.9 AET2Gv20133800.9 |
High | No | 670 | OG0002858 | Get ORF Coding potential... Type: noncoding Potential: -0.996 Folding energies... MFEI: -28.045 AMFE: -0.659 GC content %: 42.537 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
