Atauschii AET2Gv20139500
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20139500 [ AET2Gv20139500] |
2D | 31810790 | 31815611 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20139500.10 AET2Gv20139500.10 |
Low | No | 1365 | OG0002340 | Get ORF Coding potential... Type: noncoding Potential: -0.786 Folding energies... MFEI: -27.238 AMFE: -0.677 GC content %: 40.220 | |
| Atauschii_AET2Gv20139500.11 AET2Gv20139500.11 |
Low | No | 1001 | OG0002340 | Get ORF Coding potential... Type: noncoding Potential: -0.096 Folding energies... MFEI: -28.671 AMFE: -0.664 GC content %: 43.157 | |
| Atauschii_AET2Gv20139500.12 AET2Gv20139500.12 |
Low | No | 1282 | OG0002340 | Get ORF Coding potential... Type: noncoding Potential: -0.907 Folding energies... MFEI: -27.223 AMFE: -0.670 GC content %: 40.640 | |
| Atauschii_AET2Gv20139500.14 AET2Gv20139500.14 |
High | No | 1354 | OG0002340 | Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -26.388 AMFE: -0.681 GC content %: 38.774 | |
| Atauschii_AET2Gv20139500.15 AET2Gv20139500.15 |
High | No | 1208 | OG0002340 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -26.217 AMFE: -0.668 GC content %: 39.238 | |
| Atauschii_AET2Gv20139500.17 AET2Gv20139500.17 |
High | No | 785 | OG0002340 | Get ORF Coding potential... Type: noncoding Potential: -1.013 Folding energies... MFEI: -29.248 AMFE: -0.669 GC content %: 43.694 | |
| Atauschii_AET2Gv20139500.5 AET2Gv20139500.5 |
Low | No | 1772 | OG0002340 | Get ORF Coding potential... Type: noncoding Potential: -0.905 Folding energies... MFEI: -28.465 AMFE: -0.645 GC content %: 44.131 | |
| Atauschii_AET2Gv20139500.7 AET2Gv20139500.7 |
Low | No | 1727 | OG0002340 | Get ORF Coding potential... Type: noncoding Potential: -0.489 Folding energies... MFEI: -28.309 AMFE: -0.660 GC content %: 42.907 | |
| Atauschii_AET2Gv20139500.8 AET2Gv20139500.8 |
High | No | 367 | OG0069770 | Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -26.049 AMFE: -0.514 GC content %: 50.681 | |
| Atauschii_AET2Gv20139500.9 AET2Gv20139500.9 |
Low | No | 1296 | OG0002340 | Get ORF Coding potential... Type: noncoding Potential: -0.442 Folding energies... MFEI: -28.488 AMFE: -0.653 GC content %: 43.596 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20139500.12 | SwissProt | 2021-04-01 | Q8LG98 | 5.23e-8 |
| Atauschii_AET2Gv20139500.5 | SwissProt | 2021-04-01 | Q8LG98 | 2.02e-10 |
| Atauschii_AET2Gv20139500.7 | SwissProt | 2021-04-01 | Q8LG98 | 7.1e-10 |
| Atauschii_AET2Gv20139500.9 | SwissProt | 2021-04-01 | Q8LG98 | 2.75e-7 |
| Atauschii_AET2Gv20139500.10 | SwissProt | 2021-04-01 | Q8LG98 | 1.95e-10 |
| Atauschii_AET2Gv20139500.11 | SwissProt | 2021-04-01 | Q8LG98 | 6.54e-13 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
