Atauschii AET2Gv20176300
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20176300 [ AET2Gv20176300] |
2D | 43723978 | 43728215 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20176300.1 AET2Gv20176300.1 |
High | No | 1937 | OG0001538 | Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -29.814 AMFE: -0.653 GC content %: 45.638 | |
| Atauschii_AET2Gv20176300.10 AET2Gv20176300.10 |
High | No | 908 | OG0001538 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -26.806 AMFE: -0.621 GC content %: 43.172 | |
| Atauschii_AET2Gv20176300.12 AET2Gv20176300.12 |
High | No | 1610 | OG0001538 | Get ORF Coding potential... Type: noncoding Potential: -0.188 Folding energies... MFEI: -25.373 AMFE: -0.641 GC content %: 39.565 | |
| Atauschii_AET2Gv20176300.2 AET2Gv20176300.2 |
High | No | 445 | OG0001538 | Get ORF Coding potential... Type: noncoding Potential: -0.849 Folding energies... MFEI: -41.326 AMFE: -0.641 GC content %: 64.494 | |
| Atauschii_AET2Gv20176300.3 AET2Gv20176300.3 |
High | No | 1398 | OG0001538 | Get ORF Coding potential... Type: noncoding Potential: -0.979 Folding energies... MFEI: -30.951 AMFE: -0.627 GC content %: 49.356 | |
| Atauschii_AET2Gv20176300.4 AET2Gv20176300.4 |
High | No | 1478 | OG0001538 | Get ORF Coding potential... Type: noncoding Potential: -0.985 Folding energies... MFEI: -30.602 AMFE: -0.633 GC content %: 48.376 | |
| Atauschii_AET2Gv20176300.5 AET2Gv20176300.5 |
High | No | 2137 | OG0001538 | Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -29.555 AMFE: -0.665 GC content %: 44.455 | |
| Atauschii_AET2Gv20176300.6 AET2Gv20176300.6 |
High | No | 485 | OG0001538 | Get ORF Coding potential... Type: noncoding Potential: -0.930 Folding energies... MFEI: -40.268 AMFE: -0.634 GC content %: 63.505 | |
| Atauschii_AET2Gv20176300.7 AET2Gv20176300.7 |
High | No | 1793 | OG0001538 | Get ORF Coding potential... Type: noncoding Potential: -1.185 Folding energies... MFEI: -29.420 AMFE: -0.664 GC content %: 44.339 | |
| Atauschii_AET2Gv20176300.8 AET2Gv20176300.8 |
High | No | 1621 | OG0001538 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -30.130 AMFE: -0.656 GC content %: 45.898 | |
| Atauschii_AET2Gv20176300.9 AET2Gv20176300.9 |
High | No | 1464 | OG0001538 | Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -30.676 AMFE: -0.652 GC content %: 47.063 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
