Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20195300 [ AET2Gv20195300] |
2D | 50066278 | 50073284 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20195300.13 AET2Gv20195300.13 |
Low | No | 840 | OG0069844 | Get ORF Coding potential... Type: noncoding Potential: -0.113 Folding energies... MFEI: -36.452 AMFE: -0.620 GC content %: 58.810 | |
Atauschii_AET2Gv20195300.14 AET2Gv20195300.14 |
High | No | 275 | OG0069845 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -30.582 AMFE: -0.673 GC content %: 45.455 | |
Atauschii_AET2Gv20195300.6 AET2Gv20195300.6 |
Low | No | 511 | OG0024553 | Get ORF Coding potential... Type: noncoding Potential: -0.416 Folding energies... MFEI: -30.900 AMFE: -0.627 GC content %: 49.315 | |
Atauschii_AET2Gv20195300.7 AET2Gv20195300.7 |
Low | No | 338 | OG0024553 | Get ORF Coding potential... Type: noncoding Potential: -0.275 Folding energies... MFEI: -32.219 AMFE: -0.598 GC content %: 53.846 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET2Gv20195300.13 | SwissProt | 2021-04-01 | Q7X993 | 2.27e-17 |
Atauschii_AET2Gv20195300.6 | SwissProt | 2021-04-01 | Q7X993 | 1.24e-12 |
Atauschii_AET2Gv20195300.7 | SwissProt | 2021-04-01 | Q7X993 | 5.32e-14 |