GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv20215900 [ AET2Gv20215900]	2D	59708279	59709760	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv20215900.1 AET2Gv20215900.1	High	No	944	OG0004658		Get ORF Coding potential... Type: noncoding Potential: -0.905 Folding energies... MFEI: -26.939 AMFE: -0.604 GC content %: 44.597
Atauschii_AET2Gv20215900.2 AET2Gv20215900.2	High	No	789	OG0004658		Get ORF Coding potential... Type: noncoding Potential: -0.528 Folding energies... MFEI: -29.987 AMFE: -0.557 GC content %: 53.866
Atauschii_AET2Gv20215900.3 AET2Gv20215900.3	High	No	492	OG0004658		Get ORF Coding potential... Type: noncoding Potential: -0.737 Folding energies... MFEI: -29.797 AMFE: -0.570 GC content %: 52.236
Atauschii_AET2Gv20215900.4 AET2Gv20215900.4	High	No	833	OG0004658		Get ORF Coding potential... Type: noncoding Potential: -1.094 Folding energies... MFEI: -32.341 AMFE: -0.581 GC content %: 55.702
Atauschii_AET2Gv20215900.5 AET2Gv20215900.5	High	No	733	OG0004658		Get ORF Coding potential... Type: noncoding Potential: -0.995 Folding energies... MFEI: -31.883 AMFE: -0.546 GC content %: 58.390

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).