Atauschii AET2Gv20221600
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20221600 [ AET2Gv20221600] |
2D | 62986767 | 62993095 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20221600.10 AET2Gv20221600.10 |
High | No | 1751 | OG0003671 | Get ORF Coding potential... Type: noncoding Potential: -0.955 Folding energies... MFEI: -33.375 AMFE: -0.656 GC content %: 50.885 | |
| Atauschii_AET2Gv20221600.11 AET2Gv20221600.11 |
High | No | 2684 | OG0003671 | Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -31.963 AMFE: -0.657 GC content %: 48.659 | |
| Atauschii_AET2Gv20221600.5 AET2Gv20221600.5 |
High | No | 2698 | OG0003671 | Get ORF Coding potential... Type: noncoding Potential: -0.645 Folding energies... MFEI: -37.461 AMFE: -0.683 GC content %: 54.855 | |
| Atauschii_AET2Gv20221600.6 AET2Gv20221600.6 |
High | No | 3263 | OG0003671 | Get ORF Coding potential... Type: noncoding Potential: -0.761 Folding energies... MFEI: -35.575 AMFE: -0.680 GC content %: 52.344 | |
| Atauschii_AET2Gv20221600.7 AET2Gv20221600.7 |
High | No | 3398 | OG0003671 | Get ORF Coding potential... Type: noncoding Potential: -0.765 Folding energies... MFEI: -35.303 AMFE: -0.677 GC content %: 52.119 | |
| Atauschii_AET2Gv20221600.8 AET2Gv20221600.8 |
High | No | 3641 | OG0003671 | Get ORF Coding potential... Type: noncoding Potential: -0.773 Folding energies... MFEI: -35.389 AMFE: -0.684 GC content %: 51.744 | |
| Atauschii_AET2Gv20221600.9 AET2Gv20221600.9 |
High | No | 2237 | OG0003671 | Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -30.751 AMFE: -0.635 GC content %: 48.413 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
