Atauschii AET2Gv20222600
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20222600 [ AET2Gv20222600] |
2D | 63676371 | 63986820 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20222600.12 AET2Gv20222600.12 |
Low | No | 864 | OG0006820 | Get ORF Coding potential... Type: noncoding Potential: -0.866 Folding energies... MFEI: -41.111 AMFE: -0.687 GC content %: 59.838 | |
| Atauschii_AET2Gv20222600.13 AET2Gv20222600.13 |
Low | No | 582 | OG0006820 | Get ORF Coding potential... Type: noncoding Potential: -0.784 Folding energies... MFEI: -37.955 AMFE: -0.663 GC content %: 57.216 | |
| Atauschii_AET2Gv20222600.15 AET2Gv20222600.15 |
High | No | 1164 | OG0006820 | Get ORF Coding potential... Type: noncoding Potential: -0.631 Folding energies... MFEI: -39.854 AMFE: -0.675 GC content %: 59.021 | |
| Atauschii_AET2Gv20222600.16 AET2Gv20222600.16 |
Low | No | 1126 | OG0006820 | Get ORF Coding potential... Type: noncoding Potential: -0.623 Folding energies... MFEI: -39.947 AMFE: -0.668 GC content %: 59.769 | |
| Atauschii_AET2Gv20222600.17 AET2Gv20222600.17 |
Low | No | 309 | OG0024558 | Get ORF Coding potential... Type: noncoding Potential: -1.345 Folding energies... MFEI: -20.000 AMFE: -0.487 GC content %: 41.100 | |
| Atauschii_AET2Gv20222600.20 AET2Gv20222600.20 |
Low | No | 762 | OG0024558 | Get ORF Coding potential... Type: noncoding Potential: -0.693 Folding energies... MFEI: -40.144 AMFE: -0.675 GC content %: 59.449 | |
| Atauschii_AET2Gv20222600.22 AET2Gv20222600.22 |
Low | No | 637 | OG0069895 | Get ORF Coding potential... Type: noncoding Potential: -0.329 Folding energies... MFEI: -46.750 AMFE: -0.693 GC content %: 67.504 | |
| Atauschii_AET2Gv20222600.25 AET2Gv20222600.25 |
Low | No | 422 | OG0069896 | Get ORF Coding potential... Type: noncoding Potential: -0.885 Folding energies... MFEI: -29.123 AMFE: -0.574 GC content %: 50.711 | |
| Atauschii_AET2Gv20222600.26 AET2Gv20222600.26 |
High | No | 287 | OG0069897 | Get ORF Coding potential... Type: noncoding Potential: -1.183 Folding energies... MFEI: -21.707 AMFE: -0.494 GC content %: 43.902 | |
| Atauschii_AET2Gv20222600.4 AET2Gv20222600.4 |
Low | No | 910 | OG0006820 | Get ORF Coding potential... Type: noncoding Potential: -0.862 Folding energies... MFEI: -36.154 AMFE: -0.654 GC content %: 55.275 | |
| Atauschii_AET2Gv20222600.7 AET2Gv20222600.7 |
High | No | 661 | OG0069898 | Get ORF Coding potential... Type: noncoding Potential: -0.615 Folding energies... MFEI: -43.676 AMFE: -0.692 GC content %: 63.086 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20222600.12 | SwissProt | 2021-04-01 | Q8LGG8 | 9.6e-10 |
| Atauschii_AET2Gv20222600.4 | SwissProt | 2021-04-01 | Q8LGG8 | 1.89e-9 |
| Atauschii_AET2Gv20222600.13 | SwissProt | 2021-04-01 | Q8LGG8 | 9.24e-10 |
| Atauschii_AET2Gv20222600.17 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Atauschii_AET2Gv20222600.16 | SwissProt | 2021-04-01 | Q8LGG8 | 7.12e-9 |
| Atauschii_AET2Gv20222600.20 | SwissProt | 2021-04-01 | Q57951 | 7.76e-10 |
| Atauschii_AET2Gv20222600.22 | SwissProt | 2021-04-01 | P72745 | 5.04e-10 |
| Atauschii_AET2Gv20222600.25 | SwissProt | 2021-04-01 | Q8LGG8 | 2.71e-10 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
