Atauschii AET2Gv20224100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20224100 [ AET2Gv20224100] |
2D | 64372747 | 64376767 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20224100.10 AET2Gv20224100.10 |
High | No | 1180 | OG0003672 | Get ORF Coding potential... Type: noncoding Potential: -0.592 Folding energies... MFEI: -32.161 AMFE: -0.673 GC content %: 47.797 | |
| Atauschii_AET2Gv20224100.2 AET2Gv20224100.2 |
High | No | 1541 | OG0003672 | Get ORF Coding potential... Type: noncoding Potential: -0.924 Folding energies... MFEI: -24.607 AMFE: -0.627 GC content %: 39.260 | |
| Atauschii_AET2Gv20224100.5 AET2Gv20224100.5 |
High | No | 637 | OG0003672 | Get ORF Coding potential... Type: noncoding Potential: -0.890 Folding energies... MFEI: -23.265 AMFE: -0.610 GC content %: 38.148 | |
| Atauschii_AET2Gv20224100.6 AET2Gv20224100.6 |
High | No | 1124 | OG0003672 | Get ORF Coding potential... Type: noncoding Potential: -0.745 Folding energies... MFEI: -30.507 AMFE: -0.672 GC content %: 45.374 | |
| Atauschii_AET2Gv20224100.7 AET2Gv20224100.7 |
High | No | 814 | OG0003672 | Get ORF Coding potential... Type: noncoding Potential: -1.167 Folding energies... MFEI: -24.644 AMFE: -0.641 GC content %: 38.452 | |
| Atauschii_AET2Gv20224100.8 AET2Gv20224100.8 |
High | No | 548 | OG0003672 | Get ORF Coding potential... Type: noncoding Potential: -0.995 Folding energies... MFEI: -27.190 AMFE: -0.662 GC content %: 41.058 | |
| Atauschii_AET2Gv20224100.9 AET2Gv20224100.9 |
High | No | 490 | OG0003672 | Get ORF Coding potential... Type: noncoding Potential: -0.858 Folding energies... MFEI: -26.388 AMFE: -0.619 GC content %: 42.653 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
